Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Length-scale dependent nano-viscosity in soft matter systems and in living cells

2011/02/A/ST3/00143

Keywords:

scale dependent viscosity Sutherland-Stokes-Einstein equation diffusion dynamic light scattering fluorescence correlation spectroscopy,

Descriptors:

  • ST3_15: Statistical physics of condensed matter, phase transitions, noise and fluctuations, etc.
  • ST3_19:
  • ST3_17: Other related subjects

Panel:

ST3 - Condensed matter physics: structure, electronic properties, fluids, nanosciences, biological physics

Host institution :

Instytut Chemii Fizycznej PAN

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Robert Hołyst 

Number of co-investigators in the project: 13

Call: MAESTRO 1 - announced on 2011-06-15

Amount awarded: 2 930 000 PLN

Project start date (Y-m-d): 2012-04-27

Project end date (Y-m-d): 2016-04-27

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. pipeta wielokanałowa, wirówka typu minispin, Komora laminarna,cieplarka, chłodziarko-zamrażarka, zamrażarka,termostat (termoblok) (38 878 PLN)
  2. elementy potrzebne do pomiarów FCS z podwójnym ogniskiem – 2 lasery pulsowe, pryzmat Nomarskiego, stolik antywibracyjny, stolik do skanowania (280 000 PLN)
  3. reometr (240 000 PLN)
  4. SYMPHO TIME (21 621 PLN)

Information in the final report

  • Publication in academic press/journals (24)
  1. Biologistics—Diffusion coefficients for complete proteome of Escherichia coli
    Authors:
    T.Kalwarczyk, M.Tabaka i R.Hołyst
    Academic press:
    Bioinformatics (rok: 2012, tom: 28, strony: 2971-2978), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/bts537 - link to the publication
  2. Activation Energy for Mobility of Dyes and Proteins in Polymer Solutions: From Diffusion of Single Particles to Macroscale Flow
    Authors:
    Sozanski, K ; Wisniewska, A ; Kalwarczyk, T ; Holyst, R
    Academic press:
    Physical Review Letters (rok: 2013, tom: 111, strony: 228301-4), Wydawca: APS
    Status:
    Published
    DOI:
    10.1103/PhysRevLett.111.228301 - link to the publication
  3. Fluorescence correlation spectroscopy analysis for accurate determination of proportion of doubly labeled DNA in fluorescent DNA pool for quantitative biochemical assays
    Authors:
    Hou, S ; Sun, LL ; Wieczorek, SA ; Kalwarczyk, T ; Kaminski, TS ; Holyst, R
    Academic press:
    BIOSENSORS & BIOELECTRONICS (rok: 2014, tom: 51, strony: 45519), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.bios.2013.07.010 - link to the publication
  4. Influence of nanomechanical stress induced by ZnO nanoparticles of different shapes on the viability of cells
    Authors:
    Kinga Matuła, Łukasz Richter,Witold Adamkiewicz,Bo Åkerstro,Jan Paczesny, Robert Hołyst
    Academic press:
    Soft Matter (rok: 2016, tom: 12, strony: 4162--4169), Wydawca: RSC
    Status:
    Published
    DOI:
    10.1039/c6sm00336b - link to the publication
  5. Scaling of activation energy for macroscopic flow in poly (ethylene glycol) solutions: Entangled–Non-entangled crossover
    Authors:
    Agnieszka Wiśniewska, Krzysztof Sozański, Tomasz Kalwarczyk, Karolina Kędra-Królik, Christoph Pieper, Stefan A Wieczorek, Sławomir Jakieła, Jörg Enderlein, Robert Hołyst
    Academic press:
    Polymer (rok: 2014, tom: 55, strony: 4651-4657), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.polymer.2014.07.029 - link to the publication
  6. Self-Assembly of Gold Nanoparticles into 2D Arrays Induced by Bolaamphiphilic Ligands
    Authors:
    Paczesny, J ; Wojcik, M ; Sozanski, K ; Nikiforov, K ; Tschierske, C ; Lehmann, A; Gorecka, E ; Mieczkowski, J; Holyst, R
    Academic press:
    Journal of Physical Chemistry C (rok: 2013, tom: 117, strony: 24056-24062), Wydawca: ACS
    Status:
    Published
    DOI:
    10.1021/jp408826f - link to the publication
  7. Tracking structural transitions of bovine serum albumin in surfactant solutions by fluorescence correlation spectroscopy and fluorescence lifetime analysis
    Authors:
    Zhang, XZ ; Poniewierski, A ; Hou, S ; Sozanski, K ; Wisniewska, A ; Wieczorek, SA ; Kalwarczyk, T ; Sun, LL ; Holyst, R
    Academic press:
    Soft Matter (rok: 2015, tom: 11, strony: 2512-2518), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/c5sm00101c - link to the publication
  8. Small Crowders Slow Down Kinesin-1 Stepping by Hindering Motor Domain Diffusion
    Authors:
    Sozanski, K ; Ruhnow, F ; Wisniewska, A ; Tabaka, M ; Diez, S ; Holyst, R
    Academic press:
    Phys.Rev.Lett. (rok: 2015, tom: 115, strony: 218102), Wydawca: APS
    Status:
    Published
    DOI:
    10.1103/PhysRevLett.115.218102 - link to the publication
  9. A depletion layer in polymer solutions at an interface oscillating at the subnano-to submicrometer scale
    Authors:
    Krzysztof Sozanski, Agnieszka Wisniewska, Tomasz Piasecki, Karol Waszczuk, Anna Ochab-Marcinek, Teodor Gotszalk, Robert Holyst
    Academic press:
    soft matter (rok: 2014, tom: 10, strony: 7762-7768), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/C4SM01280A - link to the publication
  10. Implications of macromolecular crowding for protein-protein association kinetics in the cytoplasm of living cells
    Authors:
    Tabaka, M ; Sun, LL ; Kalwarczyk, T; Holyst, R
    Academic press:
    Soft Matter (rok: 2013, tom: 9, strony: 4386-4389), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/c3sm00013c - link to the publication
  11. A "wrap-and-wrest" mechanism of fluorescence quenching of CdSe/ZnS quantum dots by surfactant molecules
    Authors:
    Kalwarczyk, E ; Ziebacz, N ; Kalwarczyk, T ; Holyst, R ; Fialkowski, M
    Academic press:
    NANOSCALE (rok: 2013, tom: 5, strony: 9908-9916), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/C3NR03293K - link to the publication
  12. A "nano-windmill" driven by a flux of water vapour: a comparison to the rotating ATPase
    Authors:
    Niton, P ; Zywocinski,A ; Fialkowski, M ; Holyst, R
    Academic press:
    NANOSCALE (rok: 2013, tom: 5, strony: 9732-9738), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/c3nr03496h - link to the publication
  13. Fractal trace of earthworms
    Authors:
    K.Burdzy, R.Holyst, L.Pruski
    Academic press:
    Phys.Rev.E (rok: 2013, tom: 87, strony: 52120), Wydawca: American Physical Society
    Status:
    Published
    DOI:
    10.1103/PhysRevE.87.052120 - link to the publication
  14. Hollow microtubes made of carbon, boron and gold: novel semiconducting nanocomposite material for applications in electrochemistry and temperature sensing
    Authors:
    Paczesny, J ; Wybranska, K ; Niedziolka-Jonsson, J; Rozniecka, E ; Wadowska, M ; Zawal, P ; Malka, I ; Dziecielewski, I ; Prochowicz, D ; Holyst, R ; Fialkowski, M
    Academic press:
    RSC Advances (rok: 2015, tom: 5, strony: 64083-64090), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/c5ra12146a - link to the publication
  15. Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data
    Authors:
    Tabaka, M; Burdzy, K; Holyst, R
    Academic press:
    Phys.Rev. E (rok: 2015, tom: 92, strony: 22721), Wydawca: Amwrican Physical Society
    Status:
    Published
    DOI:
    10.1103/PhysRevE.92.022721 - link to the publication
  16. Motion of Molecular Probes and Viscosity Scaling in Polyelectrolyte Solutions at Physiological Ionic Strength
    Authors:
    Krzysztof Sozanski, Agnieszka Wisniewska, Tomasz Kalwarczyk, Anna Sznajder, and Robert Holyst
    Academic press:
    Plos One (rok: 2016, tom: 11, strony: e0161409), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0161409 - link to the publication
  17. Quantitative influence of macromolecular crowding on gene regulation kinetics
    Authors:
    Tabaka M, Kalwarczyk T, Holyst R
    Academic press:
    Nucleic Acids Research (rok: 2014, tom: 42, strony: 727–738.), Wydawca: Oxford Journals
    Status:
    Published
    DOI:
    10.1093/nar/gkt907 - link to the publication
  18. Scaling Equation for Viscosity of Polymer Mixtures in Solutions with Application to Molecular Probe Diffusion
    Authors:
    Agnieszka Wisniewska, Krzysztof Sozanski, Tomasz Kalwarczyk, Karolina Kedra-Krolik, and Robert Holyst∗
    Academic press:
    Macromolecules (rok: 2016, tom: 50, strony: 4555−4561), Wydawca: ACS
    Status:
    Published
    DOI:
    10.1021/acs.macromol.7b00545 - link to the publication
  19. The Hinge Region Strengthens the Nonspecific Interaction between LacRepressor and DNA: A Computer Simulation Study
    Authors:
    Lili Sun, Marcin Tabaka, Sen Hou, Lin Li, Krzysztof Burdzy, Aleksei Aksimentiev, Christopher Maffeo, Xuzhu Zhang, Robert Holyst
    Academic press:
    PLOS ONE (rok: 2016, tom: 11, strony: e0152002), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal. - link to the publication
  20. Analytical form of the autocorrelation function for the Fluorescence Correlation Spectroscopy
    Authors:
    Robert Hołyst, Andrzej Poniewierski, and Xuzhu Zhang
    Academic press:
    Soft Matter (rok: 2017, tom: 13, strony: 1267--1275), Wydawca: RSC
    Status:
    Published
    DOI:
    10.1039/c6sm02643e - link to the publication
  21. Length-scale dependent transport properties of colloidal and protein solutions for prediction of crystal nucleation rates
    Authors:
    Tomasz Kalwarczyk, Krzysztof Sozanski, Slawomir Jakiela, Agnieszka Wisniewska, Ewelina Kalwarczyk, Katarzyna Kryszczuk, Sen Hou, Robert Holyst
    Academic press:
    Nanoscale (rok: 2014, tom: 6, strony: 10340-10346), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/C4NR00647J - link to the publication
  22. Ordering of bacteriophages in the electric field: Application for bacteria detection
    Authors:
    Richter, L ; Matula, K ; Lesniewski, A; Kwasnicka, K ; Los, J ; Los, M ; Paczesny, J; Holyst, R
    Academic press:
    SENSORS AND ACTUATORS B-CHEMICAL (rok: 2016, tom: 224, strony: 233-240), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.snb.2015.09.042 - link to the publication
  23. Taylor Dispersion Analysis in Coiled Capillaries at High Flow Rates
    Authors:
    Lewandrowska, A ; Majcher, A ; Ochab-Marcinek, A ; Tabaka, M ; Holyst, R
    Academic press:
    Analytical Chemistry (rok: 2013, tom: 85, strony: 4051-4056), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/ac4007792 - link to the publication
  24. The effect of depletion layer on diffusion of nanoparticles in solutions of flexible and polydisperse polymers
    Authors:
    A. Ochab-Marcinek, S.A. Wieczorek, N. Ziebacz, R. Holyst
    Academic press:
    Soft Matter (rok: 2012, tom: 8, strony: 11173–11179), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/c2sm25925g - link to the publication

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