Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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The cucumber transcriptome analysis unravels the sex determination mechanism in plants

2011/01/B/NZ2/01631

Keywords:

transcriptom profile Cucumis sativus sex determiantion Illumina sequencing

Descriptors:

  • NZ2_2: Genomics, transcriptomics, epigenomics
  • NZ3_10: Developmental genetics in plants
  • NZ9_4: Horticulture

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Szkoła Główna Gospodarstwa Wiejskiego w Warszawie, Wydział Ogrodnictwa i Architektury Krajobrazu, Katedra Genetyki, Hodowli i Biotechnologii Roślin

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Magdalena Pawełkowicz 

Number of co-investigators in the project: 6

Call: OPUS 1 - announced on 2011-03-15

Amount awarded: 699 600 PLN

Project start date (Y-m-d): 2011-12-06

Project end date (Y-m-d): 2015-12-05

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. komputer przenośny (8 000 PLN)
  2. zestaw komputerowy (17 000 PLN)

Information in the final report

  • Publication in academic press/journals (5)
  • Articles in post-conference publications (12)
  1. Next generation sequencing and omics in cucumber (Cucumis sativusL.) breeding directed research
    Authors:
    Magdalena Pawełkowicza, Konrad Zielinski, Dorota Zielinska, Wojciech Plader,Kouhei Yagi, Michał Wojcieszek, Ewa Siedlecka, Grzegorz Bartoszewski,Agnieszka Skarzynska, Zbigniew Przybecki
    Academic press:
    Plant Science (rok: 2016, tom: 242, strony: 77-88), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.plantsci.2015.07.025 - link to the publication
  2. GENETIC AND MOLECULAR BASES OF CUCUMBER (Cucumis sativus L.) SEX DEVELOPMENT
    Authors:
    MAGDALENA EWA PAWEŁKOWICZ, AGNIESZKA SKARZYŃSKA, WOJCIECH PLĄDER, ZBIGNIEW PRZYBECKI
    Academic press:
    Journal of Plant Growth Regulation , Wydawca: Springer
    Status:
    Submitted
    DOI:
    brak - link to the publication
  3. Plant microRNAs—their significance and potential applications
    Authors:
    Maria Szwacka*, Zbigniew Przybecki, Magdalena Pawełkowicz, Paweł Osipowski, Michał Wojcieszek, Wojciech Pląder
    Academic press:
    Functional Plant Biology , Wydawca: CSIRO Publishing
    Status:
    Submitted
    DOI:
    brak - link to the publication
  4. Identification and characterization of genes connected with flower morphogenesis in cucumber
    Authors:
    M. Pawełkowicz, P. Osipowski, M. Wojcieszek, R. Wóycicki, J. Witkowicz, D. Hincha, Z. Przybecki
    Academic press:
    BioTechnologia (rok: 2012, tom: 93 (2), strony: 123-134), Wydawca: Scientific Publishers OWN -BioTechnologia - Comittee on Biotechnology Polish Academy of Scince; Institute of Bioorganic Chemistry Polish Academy of Sciences
    Status:
    Published
    DOI:
    brak - link to the publication
  5. Comparative analysis of novel CsABI1 and CsABI2 genes in monoecious and gynoecious cucumber lines
    Authors:
    Magdalena Pawełkowicz,Tomasz Krzywkowski, Paweł Osipowski, Michał Wojcieszek, Kouhei Yagi, Wojciech Pląder, Zbigniew Przybecki
    Academic press:
    Genes and Genomics , Wydawca: Springer Link
    Status:
    Submitted
    DOI:
    brak - link to the publication
  1. Automated functional annotation using classification and data fusion algorithms for genomic, transcriptomic and proteomic science
    Authors:
    Nowotka M, Pawełkowicz M, Wojcieszek M, Przybecki Z, Nowak R
    Conference:
    XIII conference on Molecular biology in diagnostics of infectious diseases and biotechnology (rok: 2012, ), Wydawca: Committee on Microbiology; Committee of Veterinary Scinces Division II Biological & Agriclutural Sciences Polish Academy of Sciences
    Data:
    konferencja 24.11.2012
    Status:
    Published
  2. Comparative Analysis of Transcriptomes Connected with Sex Expression in Cucumber.
    Authors:
    Pawelkowicz M. Pryszcz L. Wojcieszek, M. Osipowski P. Plader W. Przybecki Z
    Conference:
    Pawelkowicz M. Pryszcz L. Wojcieszek, M. Osipowski P. Plader W. Przybecki Z. (2015, January). Comparative Analysis of Transcriptomes Connected with Sex Expression in Cucumber. In Plant and Animal Genome XXIII Conference. Plant and Animal Genome.USA San Diego P0476 (rok: 2015, ), Wydawca: PAG
    Data:
    konferencja 10- 14. I
    Status:
    Published
  3. The discrepancies in the results of bioinformatics tools for genomic structural annotation
    Authors:
    Magdalena Pawełkowicz, Robert Nowak, Paweł Osipowski, Jacek Rymuszka, Katarzyna Świerkula, Michał Wojcieszek1, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiments (rok: 2014, ), Wydawca: SPIE
    Data:
    konferencja 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication
  4. Advantages and disadvantages in usage of bioinformatic programs in promoter region analysis
    Authors:
    Magdalena Ewa Pawełkowicz, Agnieszka Skarzyńska, Kacper Posyniak, Karolina Ziąbska, Wojciech Pląder, Zbigniew Przybecki
    Conference:
    XXXVIth IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (rok: 2015, ), Wydawca: SPIE
    Data:
    konferencja 25-31 V 2015
    Status:
    Published
  5. Computational structural variation discovery in genomes | state of the art and challenges
    Authors:
    Paweł Osipowski, Magdalena Pawełkowicz, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (rok: 2014, ), Wydawca: SPIE
    Data:
    konferencja 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication
  6. The genome-wide overview of genes connected with flower morphogenesis in cucumber
    Authors:
    M. Pawełkowicz, M.Wojcieszek, J. Witkowicz, P.Osipowski, R.Wóycicki, D. Hincha, Z.Przybecki
    Conference:
    XIII Overall Polish in vitro Culture and Plant Biotechnology Conference (rok: 2012, ), Wydawca: BioTechnologia - Comittee on Biotechnology Polish Academy of Scince; Institute of Bioorganic Chemistry Polish Academy of Sciences
    Data:
    konferencja 24-27.09.2013
    Status:
    Published
    DOI:
    link to the publication
  7. The role of ubiquitins in cucumber (C. sativus L.) flower morphogenesis.
    Authors:
    PAWEŁKOWICZ M., KOWALCZUK C., OSIPOWSKI P., WOJCIESZEK M., KOJDER G., KOSIK K., PRZYBECKI Z.
    Conference:
    5th Central European Congress of Life Science EUROBIOTECH 2013 (rok: 2013, ), Wydawca: Polish Ministry of Science and Higher Education
    Data:
    konferencja 8th-11th October
    Status:
    Published
  8. Genomes correction and assembling - present methods and tools
    Authors:
    Michał Wojcieszek, Magdalena Pawełkowicz, Robert Nowak, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (rok: 2014, ), Wydawca: SPIE
    Data:
    konferencja 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication
  9. The differential expression of genes potentially involved in cucumber floral buds development
    Authors:
    Pawełkowicz M; Osipowski P; Przybecki Z
    Conference:
    XIII conference on Molecular biology in diagnostics of infectious diseases and biotechnology (rok: 2012, ), Wydawca: Committee on Microbiology; Committee of Veterinary Scinces Division II Biological & Agriclutural Sciences Polish Academy of Sciences
    Data:
    konferencja 24.11.2012
    Status:
    Published
  10. Identification and characterization of novel CsABI1 and CsABI2 genes in cucumber genome using comprarative analysis
    Authors:
    PAWEŁKOWICZ M., KRZYWKOWSKI T., KOWALCZUK C., WÓYCICKI R., OSIPOWSKI P., PRZYBECKI Z.
    Conference:
    IV POLSKI KONGRES GENETYKI (rok: 2013, ), Wydawca: Fundacja Uniwersytetu Medycznego w Poznaniu
    Data:
    konferencja 10-13 września
    Status:
    Published
  11. Genomic identyfication and characterization of GY/gy gene in cucumber
    Authors:
    OSIPOWSKI P., WÓYCICKI R., WITKOWICZ J., PAWEŁKOWICZ M., WOJCIESZEK M., SIEDLECKA E., GUTMAN W., PRZYBECKI Z.,
    Conference:
    IV POLSKI KONGRES GENETYKI (rok: 2013, ), Wydawca: Fundacja Uniwersytetu Medycznego w Poznaniu
    Data:
    konferencja 10-13 września
    Status:
    Published
  12. Identification and analysys of WUSCHEL (WUS/WOX) and CLAVATA genes in cucumber (Cucumis sativus L.).
    Authors:
    WOJCIESZEK M., PAWEŁKOWICZ M., OLSZAK M.L., JĘDRZEJUK A., PRZYBECKI Z., BURZA W.
    Conference:
    5th Central European Congress of Life Science EUROBIOTECH 2013 (rok: 2013, ), Wydawca: Polish Ministry of Science and Higher Education
    Data:
    konferencja 8th-11th October
    Status:
    Published

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