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The cucumber transcriptome analysis unravels the sex determination mechanism in plants

2011/01/B/NZ2/01631

Keywords

Descriptors

  • NZ2_2: Genomika, transkryptomika i epigenomika
  • NZ3_10: Genetyka rozwoju roślin
  • NZ9_4: Naukowe podstawy ogrodnictwa

Panel

NZ2 – Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution

Szkoła Główna Gospodarstwa Wiejskiego w Warszawie, Wydział Ogrodnictwa i Architektury Krajobrazu; Katedra Genetyki, Hodowli i Biotechnologii Roślin

Voivodeship: mazowieckie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr Magdalena Ewa Pawełkowicz

Number of co-investigators in the project: 6

Call

OPUS 1 – announced on 2011-03-15

Amount awarded
699 600 PLN
Project start date
2011-12-06
Project end date
2015-12-05
Project duration
48 months (the same as in the proposal)
Project status
Project settled

Equipment purchased [PL]

  1. komputer przenośny. Cost: 8 000 PLN
  2. zestaw komputerowy. Cost: 17 000 PLN

Information in the final report

Publication in academic press/journals (2)

  1. Next generation sequencing and omics in cucumber (Cucumis sativusL.) breeding directed research

    Authors:
    Magdalena Pawełkowicza, Konrad Zielinski, Dorota Zielinska, Wojciech Plader,Kouhei Yagi, Michał Wojcieszek, Ewa Siedlecka, Grzegorz Bartoszewski,Agnieszka Skarzynska, Zbigniew Przybecki
    Academic press:
    Plant Science (year: 2016, volume: 242, pages: 77-88), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.plantsci.2015.07.025 – link to the publication

  2. Identification and characterization of genes connected with flower morphogenesis in cucumber

    Authors:
    M. Pawełkowicz, P. Osipowski, M. Wojcieszek, R. Wóycicki, J. Witkowicz, D. Hincha, Z. Przybecki
    Academic press:
    BioTechnologia (year: 2012, volume: 93 (2), pages: 123-134), Publisher: Scientific Publishers OWN -BioTechnologia - Comittee on Biotechnology Polish Academy of Scince; Institute of Bioorganic Chemistry Polish Academy of Sciences
    Status:
    Published

Articles in post-conference publications (12)

  1. Identification and characterization of novel CsABI1 and CsABI2 genes in cucumber genome using comprarative analysis

    Authors:
    PAWEŁKOWICZ M., KRZYWKOWSKI T., KOWALCZUK C., WÓYCICKI R., OSIPOWSKI P., PRZYBECKI Z.
    Conference:
    IV POLSKI KONGRES GENETYKI (year: 2013, pages: 145-146 ZP25), Publisher: Fundacja Uniwersytetu Medycznego w Poznaniu
    Date:
    conference 10-13 września
    Status:
    Published

  2. Computational structural variation discovery in genomes | state of the art and challenges

    Authors:
    Paweł Osipowski, Magdalena Pawełkowicz, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (year: 2014, pages: 92901J 1-6), Publisher: SPIE
    Date:
    conference 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication

  3. The discrepancies in the results of bioinformatics tools for genomic structural annotation

    Authors:
    Magdalena Pawełkowicz, Robert Nowak, Paweł Osipowski, Jacek Rymuszka, Katarzyna Świerkula, Michał Wojcieszek1, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiments (year: 2014, pages: 92901L 1 - 6), Publisher: SPIE
    Date:
    conference 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication

  4. Genomic identyfication and characterization of GY/gy gene in cucumber

    Authors:
    OSIPOWSKI P., WÓYCICKI R., WITKOWICZ J., PAWEŁKOWICZ M., WOJCIESZEK M., SIEDLECKA E., GUTMAN W., PRZYBECKI Z.,
    Conference:
    IV POLSKI KONGRES GENETYKI (year: 2013, pages: 185 RP5), Publisher: Fundacja Uniwersytetu Medycznego w Poznaniu
    Date:
    conference 10-13 września
    Status:
    Published

  5. Automated functional annotation using classification and data fusion algorithms for genomic, transcriptomic and proteomic science

    Authors:
    Nowotka M, Pawełkowicz M, Wojcieszek M, Przybecki Z, Nowak R
    Conference:
    XIII conference on Molecular biology in diagnostics of infectious diseases and biotechnology (year: 2012, pages: 164-167), Publisher: Committee on Microbiology; Committee of Veterinary Scinces Division II Biological & Agriclutural Sciences Polish Academy of Sciences
    Date:
    conference 24.11.2012
    Status:
    Published

  6. The differential expression of genes potentially involved in cucumber floral buds development

    Authors:
    Pawełkowicz M; Osipowski P; Przybecki Z
    Conference:
    XIII conference on Molecular biology in diagnostics of infectious diseases and biotechnology (year: 2012, pages: 171-174), Publisher: Committee on Microbiology; Committee of Veterinary Scinces Division II Biological & Agriclutural Sciences Polish Academy of Sciences
    Date:
    conference 24.11.2012
    Status:
    Published

  7. The genome-wide overview of genes connected with flower morphogenesis in cucumber

    Authors:
    M. Pawełkowicz, M.Wojcieszek, J. Witkowicz, P.Osipowski, R.Wóycicki, D. Hincha, Z.Przybecki
    Conference:
    XIII Overall Polish in vitro Culture and Plant Biotechnology Conference (year: 2012, pages: 170), Publisher: BioTechnologia - Comittee on Biotechnology Polish Academy of Scince; Institute of Bioorganic Chemistry Polish Academy of Sciences
    Date:
    conference 24-27.09.2013
    Status:
    Published
    DOI:
    link to the publication

  8. Advantages and disadvantages in usage of bioinformatic programs in promoter region analysis

    Authors:
    Magdalena Ewa Pawełkowicz, Agnieszka Skarzyńska, Kacper Posyniak, Karolina Ziąbska, Wojciech Pląder, Zbigniew Przybecki
    Conference:
    XXXVIth IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (year: 2015, pages: 96621L-1 - 8), Publisher: SPIE
    Date:
    conference 25-31 V 2015
    Status:
    Published

  9. Genomes correction and assembling - present methods and tools

    Authors:
    Michał Wojcieszek, Magdalena Pawełkowicz, Robert Nowak, Zbigniew Przybecki
    Conference:
    XXXIV-th IEEE-SPIE Joint Symposium on Photonics, Web Engineering, Electronics for Astronomy and High Energy Physics Experiment (year: 2014, pages: 92901X 1-8), Publisher: SPIE
    Date:
    conference 26.05.2014 - 01.06.2014
    Status:
    Published
    DOI:
    link to the publication

  10. The role of ubiquitins in cucumber (C. sativus L.) flower morphogenesis.

    Authors:
    PAWEŁKOWICZ M., KOWALCZUK C., OSIPOWSKI P., WOJCIESZEK M., KOJDER G., KOSIK K., PRZYBECKI Z.
    Conference:
    5th Central European Congress of Life Science EUROBIOTECH 2013 (year: 2013, pages: 128), Publisher: Polish Ministry of Science and Higher Education
    Date:
    conference 8th-11th October
    Status:
    Published

  11. Identification and analysys of WUSCHEL (WUS/WOX) and CLAVATA genes in cucumber (Cucumis sativus L.).

    Authors:
    WOJCIESZEK M., PAWEŁKOWICZ M., OLSZAK M.L., JĘDRZEJUK A., PRZYBECKI Z., BURZA W.
    Conference:
    5th Central European Congress of Life Science EUROBIOTECH 2013 (year: 2013, pages: 132 P8.6), Publisher: Polish Ministry of Science and Higher Education
    Date:
    conference 8th-11th October
    Status:
    Published

  12. Comparative Analysis of Transcriptomes Connected with Sex Expression in Cucumber.

    Authors:
    Pawelkowicz M. Pryszcz L. Wojcieszek, M. Osipowski P. Plader W. Przybecki Z
    Conference:
    Pawelkowicz M. Pryszcz L. Wojcieszek, M. Osipowski P. Plader W. Przybecki Z. (2015, January). Comparative Analysis of Transcriptomes Connected with Sex Expression in Cucumber. In Plant and Animal Genome XXIII Conference. Plant and Animal Genome.USA San Diego P0476 (year: 2015, pages: P0476), Publisher: PAG
    Date:
    conference 10- 14. I
    Status:
    Published

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