Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Computational study of conformational and thermodynamic properties of human ribosomal A-site and its interactions with aminoglycoside antibiotics.

2011/01/N/NZ1/01558

Keywords:

aminoglycoside antibiotics physicochemical properties RNA biomolecular modelling theoretical biophysics

Descriptors:

  • NZ1_1: Molecular biology
  • NZ1_3: Biophysics
  • NZ2_8: Computational biology

Panel:

NZ1 - Molecular biology, structural biology, biotechnology: molecular biology, structural biology, biotechnology

Host institution :

Uniwersytet Warszawski, Interdyscyplinarne Centrum Modelowania Matematycznego i Komputerowego

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Joanna Panecka 

Number of co-investigators in the project: 2

Call: PRELUDIUM 1 - announced on 2011-03-15

Amount awarded: 57 750 PLN

Project start date (Y-m-d): 2011-12-06

Project end date (Y-m-d): 2014-01-05

Project duration:: 25 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. komputer przenośny (2 730 PLN)
  2. wielordzeniowa stacja robocza (4 600 PLN)

Information in the final report

  • Publication in academic press/journals (3)
  • Articles in post-conference publications (1)
  1. Role of S-turn2 in the Structure, Dynamics, and Function of Mitochondrial Ribosomal A-Site. A Bioinformatics and Molecular Dynamics Simulation Study
    Authors:
    Joanna Panecka, Marek Havrila, Kamila Réblová, Jiri Šponer, Joanna Trylska
    Academic press:
    Journal of Physical Chemistry B (rok: 2014, tom: 118, strony: 6687-6701), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/jp5030685 - link to the publication
  2. Conformational dynamics of bacterial and human cytoplasmic models of the ribosomal A-site
    Authors:
    Joanna Panecka, Jiří Šponer, Joanna Trylska
    Academic press:
    Biochimie (rok: 2015, tom: 112, strony: 96-110), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.biochi.2015.02.021 - link to the publication
  3. Interplay of the Bacterial Ribosomal A-Site, S12 Protein Mutations and Paromomycin Binding: A Molecular Dynamics Study
    Authors:
    Joanna Panecka, Cameron Mura, Joanna Trylska
    Academic press:
    PLOS ONE (rok: 2014, tom: 9, strony: e111811), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0111811 - link to the publication
  1. Molecular Dynamics Techniques in the Studies of the Bacterial Ribosome
    Authors:
    Joanna Panecka, Joanna Trylska
    Conference:
    Theory and Applications of Computational Chemistry (TACC-2012) (rok: 2012, ), Wydawca: AIP Publishing LLC
    Data:
    konferencja 2-7.09.2012
    Status:
    Published
    DOI:
    link to the publication

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