Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Structure prediction of proteins and large protein assemblies guided by low-resolution or/and sparse experimental data.

2011/01/D/NZ2/07683

Keywords:

structure biology biomolecular complexes experimental restraints SAXS NMR

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ1_4: Structural biology

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski, Wydział Chemii

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Dominik Gront 

Number of co-investigators in the project: 4

Call: SONATA 1 - announced on 2011-03-15

Amount awarded: 358 600 PLN

Project start date (Y-m-d): 2011-12-07

Project end date (Y-m-d): 2014-12-06

Project duration:: 36 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. macierz dyskowa (25 000 PLN)
  2. komputer stacjonarny (3 szt.) (5 296 PLN)
  3. oprogramowanie naukowe (15 000 PLN)
  4. switch + zasilacz awaryjny (5 000 PLN)
  5. Rozbudowa klastra o nowe węzły obliczeniowe (2 szt.) (53 478 PLN)

Information in the final report

  • Publication in academic press/journals (3)
  • Articles in post-conference publications (2)
  1. Improving thermal stability of thermophilic L-threonine aldolase from Thermatoga maritima
    Authors:
    Lukasz Wieteska, Maksim Ionov, Janusz Szemraj, Andrzej Kolinski, Claudia Feller and Dominik Gront
    Academic press:
    Journal of Biotechnology (rok: 2015, tom: 199, strony: 69-76), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.jbiotec.2015.02.013 - link to the publication
  2. BioShell-Threading: Versatile Monte Carlo package for protein 3D threading
    Authors:
    Pawel Gniewek, Andrzej Kolinski, Andrzej Kloczkowski and Dominik Gront
    Academic press:
    BMC Bioinformatics (rok: 2012, tom: brak, strony: 0), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1471-2105-15-22 - link to the publication
  3. BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles
    Authors:
    Dominik Gront*, Maciej Blaszczyk, Piotr Wojciechowski and Andrzej Kolinski
    Academic press:
    Nucleic Acids Research (rok: 2012, tom: W1, strony: 45297), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gks555 - link to the publication
  1. MECHANICAL UNFOLDING OF DDFLN4 STUDIED BY COARSE-GRAINED KNOWLEDGE-BASED CABS MODEL
    Authors:
    MAKSIM KOUZA, MICHAL JAMROZ, DOMINIK GRONT, SEBASTIAN KMIECIK AND ANDRZEJ KOLINSKI
    Conference:
    From Computational Biology to Structural Biology (rok: 2014, ), Wydawca: TASK Quarterly
    Data:
    konferencja 25-27 maja
    Status:
    Published
    DOI:
    link to the publication
  2. IMPLEMENTATION AND EVALUATION OF NEW PROTOCOL FOR COMPARATIVE MODELING OF PROTEIN STRUCTURES
    Authors:
    M. STRUMILLO, A. E. DAWID, A. SZCZASIUK AND D. GRONT
    Conference:
    From Computational Biology to Structural Biology (rok: 2014, ), Wydawca: TASK Quaterly
    Data:
    konferencja 25–27 maja
    Status:
    Published
    DOI:
    link to the publication

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