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Methods and tools using functional annotations in genes groups analysis in order to improve quality of clustering and description

2011/01/D/ST6/07007

Keywords:

functional annotations functional description clustering decision rules

Descriptors:

  • ST6_9:
  • ST6_8:

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Aleksandra Helena Gruca 

Number of co-investigators in the project: 5

Call: SONATA 1 - announced on 2011-03-15

Amount awarded: 362 500 PLN

Project start date (Y-m-d): 2011-12-07

Project end date (Y-m-d): 2015-04-06

Project duration:: 40 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (8)
  1. Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets
    Authors:
    Gruca A., Sikora M.
    Academic press:
    Journal of Biomedical Semantics (rok: 2017, tom: 2017, strony: 0,349305555555556), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s13326-017-0129-x - link to the publication
  2. CHIRA—Convex Hull Based Iterative Algorithm of Rules Aggregation
    Authors:
    Sikora M., Gudyś A.
    Academic press:
    Fundamenta Informaticae (rok: 2013, tom: 123(2), strony: 143-170), Wydawca: IOS Press
    Status:
    Published
    DOI:
    10.3233/FI-2013-805 - link to the publication
  3. Censoring Weighted Separate-and- Conquer Rule Induction from Survival Data
    Authors:
    Wróbel Ł. Sikora M.
    Academic press:
    Methods of Information in Medicine (rok: 2014, tom: 53, strony: -), Wydawca: Schattauer Publishers
    Status:
    Published
    DOI:
    10.3414/ME13-01-0046 - link to the publication
  4. Application of rule induction to discover survival factors of patients after bone marrov transplantation
    Authors:
    Sikora M., Wróbel Ł., Mielcarek M., Kałwak K.
    Academic press:
    Journal of Medical Informatics & Technologies (rok: 2013, tom: 22, strony: 35-53), Wydawca: Computer System Dept. University of Sielsia
    Status:
    Published
    DOI:
    link to the publication
  5. HuntMi: an efficient and taxon-specific approach in pre-miRNA identification
    Authors:
    Gudyś A., Szcześniak M.W., Sikora M. and Makałowska I.
    Academic press:
    BMC Bioinformatics (rok: 2013, tom: 14, strony: 83), Wydawca: Jo Appleford-Cook
    Status:
    Published
    DOI:
    10.1186/1471-2105-14-83 - link to the publication
  6. Methods of normalization the results of Gene Ontology term similarity
    Authors:
    Stypka Ł., Kozielski, M.
    Academic press:
    Studia Informatica (rok: 2014, tom: 32(2), strony: 45853), Wydawca: Wydawnictwo Politechniki Śląskiej
    Status:
    Published
    DOI:
    link to the publication
  7. Data-driven adaptive selection of rule quality measures for improving rule induction and filtration algorithms
    Authors:
    Sikora M., Wróbel Ł.
    Academic press:
    International Journal of General Systems (rok: 2013, tom: 42(6), strony: 594-613), Wydawca: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/03081079.2013.798901 - link to the publication
  8. Rule based functional description of genes – estimation of the multicriteria rule interestingness measure by the UTA method
    Authors:
    Gruca A., Sikora M.
    Academic press:
    Biocybernetics and Biomedical Engineering (rok: 2013, tom: 33, strony: 222-234), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.bbe.2013.09.005 - link to the publication

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