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Methods and tools using functional annotations in genes groups analysis in order to improve quality of clustering and description

2011/01/D/ST6/07007

Keywords

Descriptors

  • ST6_9: Obliczenia naukowe
  • ST6_8: Systemy inteligentne

Panel

ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

Voivodeship: śląskie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr Aleksandra Helena Gruca

Number of co-investigators in the project: 5

Call

SONATA 1 – announced on 2011-03-15

Amount awarded
362 500 PLN
Project start date
2011-12-07
Project end date
2015-04-06
Project duration
40 months (the same as in the proposal)
Project status
Project settled

Information in the final report

Publication in academic press/journals (9)

  1. Methods of normalization the results of Gene Ontology term similarity

    Authors:
    Stypka Ł., Kozielski, M.
    Academic press:
    Studia Informatica (year: 2014, volume: 32(2), pages: 46218), Publisher: Wydawnictwo Politechniki Śląskiej
    Status:
    Published
    DOI:
    link to the publication

  2. HuntMi: an efficient and taxon-specific approach in pre-miRNA identification

    Authors:
    Gudyś A., Szcześniak M.W., Sikora M. and Makałowska I.
    Academic press:
    BMC Bioinformatics (year: 2013, volume: 14, pages: 83), Publisher: Jo Appleford-Cook
    Status:
    Published
    DOI:
    10.1186/1471-2105-14-83 – link to the publication

  3. Censoring Weighted Separate-and- Conquer Rule Induction from Survival Data

    Authors:
    Wróbel Ł. Sikora M.
    Academic press:
    Methods of Information in Medicine (year: 2014, volume: 53, pages: -), Publisher: Schattauer Publishers
    Status:
    Published
    DOI:
    10.3414/ME13-01-0046 – link to the publication

  4. Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets

    Authors:
    Gruca A., Sikora M.
    Academic press:
    Journal of Biomedical Semantics (year: 2017, volume: 2017, pages: 0,349305555555556), Publisher: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s13326-017-0129-x – link to the publication

  5. CHIRA—Convex Hull Based Iterative Algorithm of Rules Aggregation

    Authors:
    Sikora M., Gudyś A.
    Academic press:
    Fundamenta Informaticae (year: 2013, volume: 123(2), pages: 143-170), Publisher: IOS Press
    Status:
    Published
    DOI:
    10.3233/FI-2013-805 – link to the publication

  6. Application of Binary similarity measures to analysis of genes represented in Gene ontology domain

    Authors:
    Michał Kozielski, Aleksandra Gruca
    Academic press:
    Studia Informatica (year: 2012, volume: 33(2A), pages: 541-552), Publisher: Wydawnictwo Politechniki Śląskiej
    Status:
    Published
    DOI:
    link to the publication

  7. Data-driven adaptive selection of rule quality measures for improving rule induction and filtration algorithms

    Authors:
    Sikora M., Wróbel Ł.
    Academic press:
    International Journal of General Systems (year: 2013, volume: 42(6), pages: 594-613), Publisher: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/03081079.2013.798901 – link to the publication

  8. Application of rule induction to discover survival factors of patients after bone marrov transplantation

    Authors:
    Sikora M., Wróbel Ł., Mielcarek M., Kałwak K.
    Academic press:
    Journal of Medical Informatics & Technologies (year: 2013, volume: 22, pages: 35-53), Publisher: Computer System Dept. University of Sielsia
    Status:
    Published
    DOI:
    link to the publication

  9. Rule based functional description of genes – estimation of the multicriteria rule interestingness measure by the UTA method

    Authors:
    Gruca A., Sikora M.
    Academic press:
    Biocybernetics and Biomedical Engineering (year: 2013, volume: 33, pages: 222-234), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.bbe.2013.09.005 – link to the publication

Articles in post-conference publications (2)

  1. Soft Approach to Identification of Cohesive Clusters in Two Gene Representations

    Authors:
    Kozielski M., Gruca A.
    Conference:
    Knowledge-Based and Intelligent Information & Engineering Systems 18th Annual Conference (year: 2014, pages: 281–289), Publisher: Elsevier
    Date:
    conference 15-17.09.2014
    Status:
    Published
    DOI:
    link to the publication

  2. Identification of the compound subjective rule interestingness measure for rule-based functional description of genes

    Authors:
    Aleksandra Gruca, Marek Sikora
    Conference:
    The 15th International Conference on Artificial Intelligence: Methodology, Systems, Applications (year: 2012, pages: 125-134), Publisher: Springer-Verlag
    Date:
    conference 15-15.09.2012
    Status:
    Published
    DOI:
    link to the publication

Book publications / chapters in book publications (1)

  1. An Efficient Algorithm for Microarray Probes Re-annotation

    Authors:
    Foszner P., Gruca A., Polanski A., Marczyk M., Jaksik R., Polanska J.
    Book:
    Transactions on Computational Collective Intelligence XIII (year: 2014, volume: LNCS 8342, pages: 201--218), Publisher: Springer Berlin Heidelberg
    Status:
    Published
    DOI:
    link to the publication

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