Projects funded by the NCN
seQinspector - genome-wide analysis of gene transcription regulation mechanisms
2011/01/N/NZ2/04827
Keywords:
transcription regulation chromatine immunoprecipitation genomics transcription factor next generation sequencing bioinformatics
Descriptors:
- NZ2_7: Bioinformatics
- NZ2_8: Computational biology
- NZ2_2: Genomics, transcriptomics, epigenomics
Panel:
NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution :
Instytut Farmakologii PAN
woj. małopolskie
Principal investigator (from the host institution):
Number of co-investigators in the project: 3
Call: PRELUDIUM 1 - announced on 2011-03-15
Amount awarded: 94 800 PLN
Project start date (Y-m-d): 2011-12-06
Project end date (Y-m-d): 2013-12-05
Project duration:: 24 months (the same as in the proposal)
Project status: Project settled
Equipment purchased [PL]
- Serwer bazodanowy (20 700 PLN)
Information in the final report
- Publication in academic press/journals (3)
- AnnoGene: RESTful web service for annotating genomic featuresAuthors:Tomski A, Piechota M, Przewłocki RAcademic press:Journal of Applied Computer Science Methods (rok: 2014, tom: 6, strony: 101-110), Wydawca: Academy of Management SWSPiZ, IT InstituteStatus:SubmittedDOI:brak - link to the publication
- Common transcriptional effects in the mouse striatum following chronic treatment with heroin and methamphetamineAuthors:Piechota M, Korostynski M, Sikora M, Golda S, Dzbek J, Przewlocki RAcademic press:Genes, Brain and Behavior (rok: 2012, tom: 2012 Jun;11(4), strony: 404-14), Wydawca: Blackwell Publishing Ltd and InternationalStatus:PublishedDOI:10.1111/j.1601-183X.2012.00777.x. - link to the publication
- Seqinspector: position-based navigation through the ChIP-seq data landscape to identify gene expression regulatorsAuthors:Piechota M, Korostynski M, Tomski A, Przewlocki RAcademic press:BMC Bioinformatics (rok: 2015, tom: -, strony: -), Wydawca: Pubmed CentralStatus:SubmittedDOI: