LCRPlatform: new algorithms and methods for the comprehensive identification, categorization, and annotation of protein low complexity regions
2020/39/B/ST6/03447
Keywords
Descriptors
- NZ2_007: Bioinformatyka
- ST6_013: Bioinformatyka, bioobliczenia, obliczenia DNA i molekularne
Panel
ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution
Instytut Biochemii i Biofizyki PAN
Voivodeship: mazowieckie
Principal investigator (from the host institution)
dr hab. Marcin Maciej Grynberg
Number of co-investigators in the project: 6
Call
OPUS 20 – announced on 2020-09-15
- Amount awarded
- 1 004 670 PLN
- Project start date
- 2021-09-30
- Project end date
- 2026-09-29
- Project duration
- 60 months (the same as in the proposal)
- Project status
- Pending project
Project description
Download the project description in a pdf file
Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
Publication in academic press/journals (3)
-
Insights from analyses of low complexity regions with canonical methods for protein sequence comparison
- Authors:
- Patryk Jarnot, Joanna Ziemska-Legiecka, Marcin Grynberg, Aleksandra Gruca
- Academic press:
- Briefings in Bioinformatics (year: 2022, volume: 23(5), pages: bbac299), Publisher: Oxford Academic Press
- Status:
- Published
- DOI:
- 10.1093/bib/bbac299 – link to the publication
-
The Cu(II) affinity constant and reactivity of Hepcidin-25, the main iron regulator in human blood
- Authors:
- Dawid Płonka, Marta D. Wiśniewska, Joanna Ziemska-Legięcka, Marcin Grynberg, Wojciech Bal
- Academic press:
- Journal of Inorganic Biochemistry (year: 2023, volume: 248, pages: 112364), Publisher: Elsevier
- Status:
- Published
- DOI:
- 10.1016/j.jinorgbio.2023.112364 – link to the publication
-
LCRAnnotationsDB: a database of low complexity regions functional and structural annotations
- Authors:
- Joanna Ziemska-Legiecka, Patryk Jarnot, Sylwia Szymańska, Dagmara Błaszczyk, Alicja Staśczak, Hanna Langer-Macioł, Kinga Lucińska, Karolina Widzisz, Aleksandra Janas, Hanna Słowik, Wiktoria Śliwińska, Aleksandra Gruca & Marcin Grynberg
- Academic press:
- BMC Genomics (year: 2024, volume: 25, pages: 1251), Publisher: Springer Nature
- Status:
- Published
- DOI:
- 10.1186/s12864-024-10960-5 – link to the publication