Projects funded by the NCN
LCRPlatform: new algorithms and methods for the comprehensive identification, categorization, and annotation of protein low complexity regions
2020/39/B/ST6/03447
Keywords:
protein low complexity regions algorithms comparison alignment annotation function
Descriptors:
- NZ2_007:
- ST6_013:
Panel:
ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution :
Instytut Biochemii i Biofizyki Polskiej Akademii Nauk
woj. mazowieckie
Principal investigator (from the host institution):
dr hab. Marcin Maciej Grynberg
Number of co-investigators in the project: 6
Call: OPUS 20 - announced on 2020-09-15
Amount awarded: 1 004 670 PLN
Project start date (Y-m-d): 2021-09-30
Project end date (Y-m-d): 2025-09-29
Project duration:: 48 months (the same as in the proposal)
Project status: Project completed
Project description
Download the project description in a pdf file
Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
- Publication in academic press/journals (3)
- Insights from analyses of low complexity regions with canonical methods for protein sequence comparisonAuthors:Patryk Jarnot, Joanna Ziemska-Legiecka, Marcin Grynberg, Aleksandra GrucaAcademic press:Briefings in Bioinformatics (rok: 2022, tom: 23(5), strony: bbac299), Wydawca: Oxford Academic PressStatus:PublishedDOI:10.1093/bib/bbac299 - link to the publication
- LCRAnnotationsDB: a database of low complexity regions functional and structural annotationsAuthors:Joanna Ziemska-Legiecka, Patryk Jarnot, Sylwia Szymańska, Dagmara Błaszczyk, Alicja Staśczak, Hanna Langer-Macioł, Kinga Lucińska, Karolina Widzisz, Aleksandra Janas, Hanna Słowik, Wiktoria Śliwińska, Aleksandra Gruca & Marcin GrynbergAcademic press:BMC Genomics (rok: 2024, tom: 25, strony: 1251), Wydawca: Springer NatureStatus:PublishedDOI:10.1186/s12864-024-10960-5 - link to the publication
- The Cu(II) affinity constant and reactivity of Hepcidin-25, the main iron regulator in human bloodAuthors:Dawid Płonka, Marta D. Wiśniewska, Joanna Ziemska-Legięcka, Marcin Grynberg, Wojciech BalAcademic press:Journal of Inorganic Biochemistry (rok: 2023, tom: 248, strony: 112364), Wydawca: ElsevierStatus:PublishedDOI:10.1016/j.jinorgbio.2023.112364 - link to the publication