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Dissection of putative transcriptional regulators from Pseudomonas aeruginosa proteome dependent on ParA/ParB using systems biology tools.

2015/18/E/NZ2/00675

Keywords

Descriptors

  • NZ2_1: Genetyka molekularna
  • NZ2_2: Genomika, transkryptomika i epigenomika
  • NZ2_9: Biologia systemowa

Panel

NZ2 – Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution

Instytut Biochemii i Biofizyki PAN

Voivodeship: mazowieckie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr hab. Aneta Agnieszka Bartosik

Number of co-investigators in the project: 4

Call

SONATA BIS 5 – announced on 2015-06-15

Amount awarded
1 518 680 PLN
Project start date
2016-04-20
Project end date
2022-04-19
Project duration
72 months (the same as in the proposal)
Project status
Project settled

Project description

Download the project description in a pdf file

Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Komputery z oprogramowaniem. Cost: 15 000 PLN
  2. Wielodetekcyjny czytnik płytek 6-384-dołkowych umożliwiający pomiar absorbancji, fluorescencji i luminescencji wraz z oprogramowaniem. Dodatkowo kompatybilna płytka do pomiaru mikroilości DNA lub RNA przy 260 nm.. Cost: 120 000 PLN
  3. Zamrażarka do ultra niskich temperatur (-80oC). Cost: 50 000 PLN

Information in the final report

Publication in academic press/journals (6)

  1. The LysR-Type Transcriptional Regulator BsrA (PA2121) Controls Vital Metabolic Pathways in Pseudomonas aeruginosa

    Authors:
    Magdalena Modrzejewska,a Adam Kawalek,a Aneta Agnieszka Bartosika
    Academic press:
    mSystems (year: 2021, volume: 6:e00015-21, pages: e00015-21), Publisher: ASM
    Status:
    Published
    DOI:
    10.1128/mSystems.00015-21 – link to the publication

  2. The MarR-Type Regulator PA3458 Is Involved in Osmoadaptation Control in Pseudomonas aeruginosa

    Authors:
    Karolina Kotecka , Adam Kawalek , Kamil Kobylecki, Aneta Agnieszka Bartosik
    Academic press:
    International Journal of Molecular Sciences (year: 2021, volume: 2021, 22, 3982, pages: 3982), Publisher: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms22083982 – link to the publication

  3. The Lrp/AsnC-Type Regulator PA2577 Controls the EamA-like Transporter Gene PA2576 in Pseudomonas aeruginosa

    Authors:
    Magdalena Modrzejewska, Adam Kawalek, Aneta Agnieszka Bartosik
    Academic press:
    International Journal of Molecular Sciences (year: 2021, volume: 2021, 22, 13340, pages: 13340), Publisher: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms222413340 – link to the publication

  4. Genome sequence of Pseudomonas aeruginosa PAO1161, a PAO1 derivative with the ICEPae1161 integrative and conjugative element

    Authors:
    Adam Kawalek, Karolina Kotecka, Magdalena Modrzejewska, Jan Gawor, Grazyna Jagura-Burdzy and Aneta Agnieszka Bartosik
    Academic press:
    BMC Genomics (year: 2020, volume: 21, pages: (2020) 21:14), Publisher: BMC part of Springer Nature (BioMed Central Ltd.)
    Status:
    Published
    DOI:
    10.1186/s12864-019-6378-6 – link to the publication

  5. Interaction of ArmZ with the DNA-Binding Domain of MexZ Induces Expression of mexXY Multidrug Efflux Pump Genes and Antimicrobial Resistance in Pseudomonas aeruginosa

    Authors:
    Adam Kawalek, Magdalena Modrzejewska, Bartlomiej Zieniuk, Aneta Agnieszka Bartosik, Grazyna Jagura-Burdzy
    Academic press:
    Antimicrobial Agents and Chemotherapy (year: 2019, volume: 63, pages: 63:e01199-19), Publisher: American Society for Microbiology
    Status:
    Published
    DOI:
    10.1128/AAC.01199-19 – link to the publication

  6. The AraC-Type Transcriptional Regulator GliR (PA3027) Activates Genes of Glycerolipid Metabolism in Pseudomonas aeruginosa

    Authors:
    Karolina Kotecka , Adam Kawalek , Kamil Kobylecki and Aneta Agnieszka Bartosik
    Academic press:
    International Journal of Molecular Sciences (year: 2021, volume: 2021, 22, 5066, pages: 5066), Publisher: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms22105066 – link to the publication

Articles in post-conference publications (7)

  1. Studies on PA3027 – the AraC family transcriptional activator

    Authors:
    KOTECKA K., KAWAŁEK A., BARTOSIK A.A.
    Conference:
    International Biennial Conference Pseudomonas 2019, Kuala Lumpur, Malaysia, 22-26 July 2019 (year: 2019, pages: Program and Proceedings PA-2019-124, p.159), Publisher: Pseudomonas 2019
    Date:
    conference 2019-07-22-26
    Status:
    Published

  2. Analysis of three putative transcriptional regulators PA1196, PA2121 and PA2577 from Pseudomonas aeruginosa proteome

    Authors:
    M. Modrzejewska, A.A. Bartosik
    Conference:
    7th Congress of European Microbiologists (FEMS), Valencia, Spain (year: 2017, pages: Abstract: 111), Publisher: 7th Congress of European Microbiologists (FEMS)
    Date:
    conference 9-13 July 2017
    Status:
    Published

  3. Preliminary functional characterization of putative transcriptional regulators PA3027, PA3458 and PA3973 from Pseudomonas aeruginosa

    Authors:
    K. Kotecka, A.A. Bartosik
    Conference:
    7th Congress of European Microbiologists (FEMS),Valencia, Spain (year: 2017, pages: Abstract: 057), Publisher: 7th Congress of European Microbiologists (FEMS)
    Date:
    conference 9-13 July 2017
    Status:
    Published

  4. Studies on PA2121 - a LysR-type transcriptional regulator from Pseudomonas aeruginosa

    Authors:
    MODRZEJEWSKA M., KAWAŁEK A., BARTOSIK A.A.
    Conference:
    8th Congress of European Microbiologists, Glasgow, Scotland (year: 2019, pages: Abstract Book PT304, p.1020), Publisher: FEMS
    Date:
    conference 2019-07-07-11
    Status:
    Published

  5. Towards survival – logarithmic versus stationary phase studies on Pseudomonas aeruginosa

    Authors:
    BARTOSIK A.A., KOTECKA K., MODRZEJEWSKA M., KAWAŁEK A., JAGURA-BURDZY G.
    Conference:
    International Biennial Conference Pseudomonas 2019, Kuala Lumpur, Malaysia, 22-26 July 2019 (year: 2019, pages: Program and Proceedings PA-2019-073, p.108), Publisher: Pseudomonas 2019
    Date:
    conference 2019-07-22-26
    Status:
    Published

  6. Functional characterization of TetR-like transcriptional regulator PA3973 from Pseudomonas aeruginosa

    Authors:
    Kotecka Karolina, Kawalek Adam, Gawor Jan, Zuchniewicz Karolina, Gromadka Robert, Bartosik Aneta Agnieszka
    Conference:
    International Biennial Conference Pseudomonas 2022, Atlanta, USA (year: 2022, pages: 126-127; PA-2022-C003), Publisher: Pseudomonas 2022
    Date:
    conference 2022-04-18_23
    Status:
    Published

  7. Characterization of transcriptional regulator PA3458 from Pseudomonas aeruginosa

    Authors:
    KOTECKA K., KAWAŁEK A., BARTOSIK A.A.
    Conference:
    8th Congress of European Microbiologists (FEMS), Glasgow, Scotland, 7-11 July 2019 (year: 2019, pages: Abstract Book PT334, p.1050), Publisher: FEMS
    Date:
    conference 2019-07-07-11
    Status:
    Published

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