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Information of the project and the call

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[PHAICELL] Coherent quantitative phase microscopy: revisiting the basics and proposing novel numerical reconstruction methods with applications for advanced label-free bio-imaging

2020/37/B/ST7/03629

Keywords:

optical imaging quantitative phase microscopy label-free microscopy computational imaging numerical reconstruction biomedical imaging

Descriptors:

  • ST7_005:
  • ST7_011:

Panel:

ST7 - Systems and communication engineering: electronics, communication, optoelectronics

Host institution :

Politechnika Warszawska, Wydział Mechatroniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Maciej Trusiak 

Number of co-investigators in the project: 10

Call: OPUS 19 - announced on 2020-03-16

Amount awarded: 1 999 200 PLN

Project start date (Y-m-d): 2021-01-19

Project end date (Y-m-d): 2025-01-18

Project duration:: 48 months (the same as in the proposal)

Project status: Project completed

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (15)
  • Articles in post-conference publications (8)
  1. DeepVID: deep-learning accelerated variational image decomposition model tailored to fringe pattern filtration
    Authors:
    M. Cywińska, K. Szumigaj, M. Kołodziej, K. Patorski, V. Micó, S. Feng, C. Zuo, M. Trusiak
    Academic press:
    Journal of Optics (rok: 2023, tom: 25, strony: 45702), Wydawca: IOP Publishing Ltd
    Status:
    Published
    DOI:
    10.1088/2040-8986/acb3df - link to the publication
  2. High-throughput transport-of-intensity quantitative phase imaging with aberration correction
    Authors:
    Linpeng Lu , Shun Zhou, Yefeng Shu, Yanbo Jin, Jiasong Sun, Ran Ye, Maciej Trusiak, Peng Gao , Chao Zuo,
    Academic press:
    Light: Advanced Manufacturing (rok: 2024, tom: 5(4), strony: 532-541), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.37188/lam.2024.045 - link to the publication
  3. Tailoring 2D fast iterative filtering algorithm for low-contrast optical fringe pattern preprocessing
    Authors:
    Mikolaj Rogalski, Mateusz Pielach, Antonio Cicone, Piotr Zdankowski, Luiza Stanaszek, Katarzyna Drela, Krzysztof Patorski, Barbara Lukomska, Maciej Trusiak
    Academic press:
    Optics and Lasers in Engineering (rok: 2022, tom: 155, strony: 107069), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2022.107069 - link to the publication
  4. High space–time bandwidth product imaging in low coherence quantitative phase microscopy
    Authors:
    Azeem Ahmad, Paweł Gocłowski, Vishesh Dubey, Maciej Trusiak & Balpreet S. Ahluwalia
    Academic press:
    Scientific Reports (rok: 2024, tom: 14, strony: 9191), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s41598-024-59874-y - link to the publication
  5. Roadmap on computational methods in optical imaging and holography [invited]
    Authors:
    Joseph Rosen, Simon Alford, Blake Allan, Vijayakumar Anand, Shlomi Arnon, Francis Gracy Arockiaraj, Jonathan Art, Bijie Bai, Ganesh M. Balasubramaniam, Tobias Birnbaum, Nandan S. Bisht, David Blinder, Liangcai Cao, Qian Chen, Ziyang Chen, Vishesh Dubey, Karen Egiazarian, Mert Ercan, Andrew Forbes, G. Gopakumar, Yunhui Gao, Sylvain Gigan, Paweł Gocłowski, Shivasubramanian Gopinath, Alon Greenbaum, Ryoichi Horisaki, Daniel Ierodiaconou, Saulius Juodkazis, Tanushree Karmakar, Vladimir Katkovnik, Svetlana N. Khonina, Peter Kner, Vladislav Kravets, Ravi Kumar, Yingming Lai, Chen Li, Jiaji Li, Shaoheng Li, Yuzhu Li, Jinyang Liang, Gokul Manavalan, Aditya Chandra Mandal, Manisha Manisha, Christopher Mann, Marcin J. Marzejon, Chané Moodley, Junko Morikawa, Inbarasan Muniraj, Donatas Narbutis, Soon Hock Ng, Fazilah Nothlawala, Jeonghun Oh, Aydogan Ozcan, YongKeun Park, Alexey P. Porfirev, Mariana Potcoava, Shashi Prabhakar, Jixiong Pu, Mani Ratnam Rai, Mikołaj Rogalski, Meguya Ryu, Sakshi Choudhary, Gangi Reddy Salla, Peter Schelkens, Sarp Feykun Şener, Igor Shevkunov, Tomoyoshi Shimobaba, Rakesh K. Singh, Ravindra P. Singh, Adrian Stern, Jiasong Sun, Shun Zhou, Chao Zuo, Zack Zurawski, Tatsuki Tahara, Vipin Tiwari, Maciej Trusiak, R. V. Vinu, Sergey G. Volotovskiy, Hasan Yılmaz, Hilton Barbosa De Aguiar, Balpreet S. Ahluwalia & Azeem Ahmad
    Academic press:
    Applied Physics B (rok: 2024, tom: 130, strony: 166), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1007/s00340-024-08280-3 - link to the publication
  6. Numerical analysis of the effect of reduced temporal coherence in quantitative phase microscopy and tomography
    Authors:
    Wojciech Lipke, Julianna Winnik, and Maciej Trusiak
    Academic press:
    Optics Express (rok: 2022, tom: 30(12), strony: 21241-21257), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.458167 - link to the publication
  7. Common-path intrinsically achromatic optical diffraction tomography
    Authors:
    Piotr Zdańkowski, Julianna Winnik, Krzysztof Patorski, Paweł Gocłowski, Michał Ziemczonok, Michał Józwik, Małgorzata Kujawińska, Maciej Trusiak
    Academic press:
    Biomedical Optics Express (rok: 2021, tom: 12(7), strony: 4219-4234), Wydawca: Optica Publishing Group
    Status:
    Published
    DOI:
    10.1364/BOE.428828 - link to the publication
  8. Deep learning assisted variational Hilbert quantitative phase imaging
    Authors:
    Zhuoshi Li, Jiasong Sun, Yao Fan, Yanbo Jin, Qian Shen, Maciej Trusiak, Maria Cywińska, Peng Gao, Qian Chen3 Chao Zuo
    Academic press:
    Opto-electronic Science (rok: 2023, tom: 2, strony: 220023), Wydawca: OE Journals Group
    Status:
    Published
    DOI:
    10.29026/oes.2023.220023 - link to the publication
  9. DeepOrientation: convolutional neural network for fringe pattern orientation map estimation
    Authors:
    Maria Cywińska, Mikołaj Rogalski, Filip Brzeski, Krzysztof Patorski, and Maciej Trusiak
    Academic press:
    Optics Express (rok: 2022, tom: 30(23), strony: 42283-42299), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.465094 - link to the publication
  10. DeepQuadrature: universal convolutional neural network enlarging space-bandwidth product in single-shot fringe pattern optical metrology
    Authors:
    Maria Cywińska, Michał Józwik, Krzysztof Patorski, Azeem Ahmad, Balpreet Ahluwalia, Björn Kemper, and Maciej Trusiak
    Academic press:
    Journal of Physics: Photonics (rok: 2025, tom: 7(2), strony: 25024), Wydawca: IOP
    Status:
    Published
    DOI:
    10.1088/2515-7647/adc219 - link to the publication
  11. Nanometer Resolution Imaging and Tracking of Single Fluorophores by Sequential Structured Illumination
    Authors:
    Piotr Zdańkowski, Lucía F. Lopez, Guillermo P. Acuna, and Fernando D. Stefani
    Academic press:
    ACS Photonics (rok: 2022, tom: 9(12), strony: 3777–3785), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/acsphotonics.2c01391 - link to the publication
  12. Hilbert phase microscopy based on pseudo thermal illumination in the Linnik configuration
    Authors:
    Mikołaj Rogalski, Maria Cywińska, Azeem Ahmad, Krzysztof Patorski, Vicente Micó, Balpreet S. Ahluwalia, and Maciej Trusiak
    Academic press:
    Optics Letters (rok: 2022, tom: 47(22), strony: 5793-5796), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OL.471858 - link to the publication
  13. Polarization gratings aided common-path Hilbert holotomography for high-throughput lipid droplets content assay
    Authors:
    Piotr Zdańkowski, Julianna Winnik, Mikołaj Rogalski, Marcin J. Marzejon, Emilia Wdowiak, Wioleta Dudka, Michał Józwik, Maciej Trusiak
    Academic press:
    Laser and Photonics Reviews (rok: 2025, tom: 2401474, strony: 46032), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1002/lpor.202401474 - link to the publication
  14. Single-shot fringe pattern phase retrieval using improved period-guided bidimensional empirical mode decomposition and Hilbert transform
    Authors:
    Paweł Gocłowski, Maria Cywińska, Azeem Ahmad, Balpreet Ahluwalia, Maciej Trusiak
    Academic press:
    Optics Express (rok: 2021, tom: 29(20), strony: 31632-31649), Wydawca: Optics Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.435001 - link to the publication
  15. Fringe analysis: single-shot or two-frames? Quantitative phase imaging answers
    Authors:
    Maciej Trusiak
    Academic press:
    Optics Express (rok: 2021, tom: 29(12), strony: 18192-18211), Wydawca: Optica Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.423336 - link to the publication
  1. Fast locally adaptive method for optical fringe pattern filtering
    Authors:
    Mikołaj Rogalski, Jędrzej Szpygiel, Antonio Cicone, Maciej Trusiak
    Conference:
    Proceedings Volume 12223, Interferometry XXI, SPIE Optical Engineering + Applications, 2022 (rok: 2022, tom: SPIE Optical Engineering + Applications, strony: 1222309), Wydawca: SPIE
    Data:
    konferencja 22.08.2022
    Status:
    Published
    DOI:
    10.1117/12.2636210 - link to the publication
  2. Deep learning aided Variational Hilbert Quantitative Phase Imaging
    Authors:
    Maria Cywińska, Krzysztof Patorski, and Maciej Trusiak
    Conference:
    Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (rok: 2023, tom: Optica Imaging Congress, strony: HTu3C.3), Wydawca: OPTICA Publishing Group
    Data:
    konferencja 14-17.08.2023
    Status:
    Published
    DOI:
    10.1364/DH.2023.HTu3C.3 - link to the publication
  3. Bedrosian theorem problem in quantitative phase imaging
    Authors:
    Piotr Zdańkowski, Maksymilian Chlipała, Mikołaj Rogalski, and Maciej Trusiak
    Conference:
    In proceedings Optica Digital Holography and Three-Dimensional Imaging 2024 (DH) ISBN: 978-1-957171-38-8 (rok: 2024, tom: Optica Digital Holography and Three-Dimensional Imaging 2024 (DH), strony: paper M3A.2), Wydawca: Optica Publishing Group
    Data:
    konferencja 3-6.06.2024
    Status:
    Published
    DOI:
    10.1364/DH.2024.M3A.2 - link to the publication
  4. Gradient based common-path optical diffraction tomography
    Authors:
    Piotr Zdańkowski, Julianna Winnik, and Maciej Trusiak
    Conference:
    Optica Imaging Congress 2024 (3D, AOMS, COSI, ISA, pcAOP) (rok: 2024, tom: COSI, strony: paper CW1B.2), Wydawca: Optica Publishing Group
    Data:
    konferencja 15-19.07.2024
    Status:
    Published
    DOI:
    10.1364/COSI.2024.CW1B.2 - link to the publication
  5. Grating-based common-path quantitative phase microscopy in low photon budget regime
    Authors:
    M. Trusiak, P. Zdańkowski, M. Rogalski, K. Patorski
    Conference:
    Proceedings Volume 12574, Holography: Advances and Modern Trends VIII (rok: 2023, tom: SPIE Optics + Optoelectronics, 2023, Prague, Czech Republic, strony: 125740Y), Wydawca: SPIE
    Data:
    konferencja 24-28.04.2023
    Status:
    Published
    DOI:
    10.1117/12.2665601 - link to the publication
  6. Common-path grating-based interferometers with altered temporal and spatial coherence of illumination for quantitative phase microscopy and tomography
    Authors:
    M. Trusiak, K. Patorski, P. Zdańkowski, J. Winnik, W. Lipke
    Conference:
    Proceedings Volume 12223, Interferometry XXI, SPIE Optical Engineering + Applications, 2022, San Diego, California, United States (rok: 2022, tom: SPIE Optical Engineering + Applications, strony: 122230G), Wydawca: SPIE
    Data:
    konferencja 22.08.2022
    Status:
    Published
    DOI:
    10.1117/12.2636220 - link to the publication
  7. Phase from defocus: transport of intensity or in-line holography?
    Authors:
    Mikołaj Rogalski, Piotr Arcab, Emilia Wdowiak, Michał Józwik, Maciej Trusiak
    Conference:
    SPIE Proceedings Volume 12852 (rok: 2024, tom: Quantitative Phase Imaging X, strony: 128520L), Wydawca: SPIE
    Data:
    konferencja 27.01-01.02.2024
    Status:
    Published
    DOI:
    10.1117/12.3008453 - link to the publication
  8. Quantitative comparison of the light sources in grating-based common-path quantitative phase microscopy
    Authors:
    P. Zdankowski, M. Trusiak
    Conference:
    Proceedings Volume 12574, Holography: Advances and Modern Trends VIII (rok: 2023, tom: SPIE Optics + Optoelectronics, 2023, Prague, Czech Republic, strony: 125740R), Wydawca: SPIE
    Data:
    konferencja 24-28.04.2023
    Status:
    Published
    DOI:
    10.1117/12.2665811 - link to the publication

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