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[PHAICELL] Coherent quantitative phase microscopy: revisiting the basics and proposing novel numerical reconstruction methods with applications for advanced label-free bio-imaging

2020/37/B/ST7/03629

Keywords:

optical imaging quantitative phase microscopy label-free microscopy computational imaging numerical reconstruction biomedical imaging

Descriptors:

  • ST7_005:
  • ST7_011:

Panel:

ST7 - Systems and communication engineering: electronics, communication, optoelectronics

Host institution :

Politechnika Warszawska, Wydział Mechatroniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Maciej Trusiak 

Number of co-investigators in the project: 10

Call: OPUS 19 - announced on 2020-03-16

Amount awarded: 1 999 200 PLN

Project start date (Y-m-d): 2021-01-19

Project end date (Y-m-d): 2025-01-18

Project duration:: 48 months (the same as in the proposal)

Project status: Project completed

Project description

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Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (11)
  • Articles in post-conference publications (5)
  1. DeepOrientation: convolutional neural network for fringe pattern orientation map estimation
    Authors:
    Maria Cywińska, Mikołaj Rogalski, Filip Brzeski, Krzysztof Patorski, and Maciej Trusiak
    Academic press:
    Optics Express (rok: 2022, tom: 30(23), strony: 42283-42299), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.465094 - link to the publication
  2. Tailoring 2D fast iterative filtering algorithm for low-contrast optical fringe pattern preprocessing
    Authors:
    Mikolaj Rogalski, Mateusz Pielach, Antonio Cicone, Piotr Zdankowski, Luiza Stanaszek, Katarzyna Drela, Krzysztof Patorski, Barbara Lukomska, Maciej Trusiak
    Academic press:
    Optics and Lasers in Engineering (rok: 2022, tom: 155, strony: 107069), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2022.107069 - link to the publication
  3. Common-path intrinsically achromatic optical diffraction tomography
    Authors:
    Piotr Zdańkowski, Julianna Winnik, Krzysztof Patorski, Paweł Gocłowski, Michał Ziemczonok, Michał Józwik, Małgorzata Kujawińska, Maciej Trusiak
    Academic press:
    Biomedical Optics Express (rok: 2021, tom: 12(7), strony: 4219-4234), Wydawca: Optica Publishing Group
    Status:
    Published
    DOI:
    10.1364/BOE.428828 - link to the publication
  4. Fringe analysis: single-shot or two-frames? Quantitative phase imaging answers
    Authors:
    Maciej Trusiak
    Academic press:
    Optics Express (rok: 2021, tom: 29(12), strony: 18192-18211), Wydawca: Optica Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.423336 - link to the publication
  5. Numerical analysis of the effect of reduced temporal coherence in quantitative phase microscopy and tomography
    Authors:
    Wojciech Lipke, Julianna Winnik, and Maciej Trusiak
    Academic press:
    Optics Express (rok: 2022, tom: 30(12), strony: 21241-21257), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.458167 - link to the publication
  6. Nanometer Resolution Imaging and Tracking of Single Fluorophores by Sequential Structured Illumination
    Authors:
    Piotr Zdańkowski, Lucía F. Lopez, Guillermo P. Acuna, and Fernando D. Stefani
    Academic press:
    ACS Photonics (rok: 2022, tom: 9(12), strony: 3777–3785), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/acsphotonics.2c01391 - link to the publication
  7. Hilbert phase microscopy based on pseudo thermal illumination in the Linnik configuration
    Authors:
    Mikołaj Rogalski, Maria Cywińska, Azeem Ahmad, Krzysztof Patorski, Vicente Micó, Balpreet S. Ahluwalia, and Maciej Trusiak
    Academic press:
    Optics Letters (rok: 2022, tom: 47(22), strony: 5793-5796), Wydawca: OPTICA Publishing Group
    Status:
    Published
    DOI:
    10.1364/OL.471858 - link to the publication
  8. DeepVID: deep-learning accelerated variational image decomposition model tailored to fringe pattern filtration
    Authors:
    M. Cywińska, K. Szumigaj, M. Kołodziej, K. Patorski, V. Micó, S. Feng, C. Zuo, M. Trusiak
    Academic press:
    Journal of Optics (rok: 2023, tom: 25, strony: 45702), Wydawca: IOP Publishing Ltd
    Status:
    Published
    DOI:
    10.1088/2040-8986/acb3df - link to the publication
  9. Single-shot fringe pattern phase retrieval using improved period-guided bidimensional empirical mode decomposition and Hilbert transform
    Authors:
    Paweł Gocłowski, Maria Cywińska, Azeem Ahmad, Balpreet Ahluwalia, Maciej Trusiak
    Academic press:
    Optics Express (rok: 2021, tom: 29(20), strony: 31632-31649), Wydawca: Optics Publishing Group
    Status:
    Published
    DOI:
    10.1364/OE.435001 - link to the publication
  10. Deep learning assisted variational Hilbert quantitative phase imaging
    Authors:
    Zhuoshi Li, Jiasong Sun, Yao Fan, Yanbo Jin, Qian Shen, Maciej Trusiak, Maria Cywińska, Peng Gao, Qian Chen3 Chao Zuo
    Academic press:
    Opto-electronic Science (rok: 2023, tom: 2, strony: 220023), Wydawca: OE Journals Group
    Status:
    Published
    DOI:
    10.29026/oes.2023.220023 - link to the publication
  11. Deep learning assisted variational Hilbert quantitative phase imaging
    Authors:
    Zhuoshi Li, Jiasong Sun, Yao Fan, Yanbo Jin, Qian Shen, Maciej Trusiak, Maria Cywińska, Peng Gao, Qian Chen3 Chao Zuo
    Academic press:
    Opto-electronic Science (rok: 2023, tom: 2, strony: 220023), Wydawca: OE Journals Group
    Status:
    Published
    DOI:
    10.29026/oes.2023.220023 - link to the publication
  1. Common-path grating-based interferometers with altered temporal and spatial coherence of illumination for quantitative phase microscopy and tomography
    Authors:
    M. Trusiak, K. Patorski, P. Zdańkowski, J. Winnik, W. Lipke
    Conference:
    Proceedings Volume 12223, Interferometry XXI, SPIE Optical Engineering + Applications, 2022, San Diego, California, United States (rok: 2022, tom: SPIE Optical Engineering + Applications, strony: 122230G), Wydawca: SPIE
    Data:
    konferencja 22.08.2022
    Status:
    Published
    DOI:
    10.1117/12.2636220 - link to the publication
  2. Deep learning aided Variational Hilbert Quantitative Phase Imaging
    Authors:
    Maria Cywińska, Krzysztof Patorski, and Maciej Trusiak
    Conference:
    Optica Imaging Congress (3D, COSI, DH, FLatOptics, IS, pcAOP) (rok: 2023, tom: Optica Imaging Congress, strony: HTu3C.3), Wydawca: OPTICA Publishing Group
    Data:
    konferencja 14-17.08.2023
    Status:
    Published
    DOI:
    10.1364/DH.2023.HTu3C.3 - link to the publication
  3. Grating-based common-path quantitative phase microscopy in low photon budget regime
    Authors:
    M. Trusiak, P. Zdańkowski, M. Rogalski, K. Patorski
    Conference:
    Proceedings Volume 12574, Holography: Advances and Modern Trends VIII (rok: 2023, tom: SPIE Optics + Optoelectronics, 2023, Prague, Czech Republic, strony: 125740Y), Wydawca: SPIE
    Data:
    konferencja 24-28.04.2023
    Status:
    Published
    DOI:
    10.1117/12.2665601 - link to the publication
  4. Fast locally adaptive method for optical fringe pattern filtering
    Authors:
    Mikołaj Rogalski, Jędrzej Szpygiel, Antonio Cicone, Maciej Trusiak
    Conference:
    Proceedings Volume 12223, Interferometry XXI, SPIE Optical Engineering + Applications, 2022 (rok: 2022, tom: SPIE Optical Engineering + Applications, strony: 1222309), Wydawca: SPIE
    Data:
    konferencja 22.08.2022
    Status:
    Published
    DOI:
    10.1117/12.2636210 - link to the publication
  5. Quantitative comparison of the light sources in grating-based common-path quantitative phase microscopy
    Authors:
    P. Zdankowski, M. Trusiak
    Conference:
    Proceedings Volume 12574, Holography: Advances and Modern Trends VIII (rok: 2023, tom: SPIE Optics + Optoelectronics, 2023, Prague, Czech Republic, strony: 125740R), Wydawca: SPIE
    Data:
    konferencja 24-28.04.2023
    Status:
    Published
    DOI:
    10.1117/12.2665811 - link to the publication

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