Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Are Miniature Inverted-repeat Transposable Elements involved in fine-tuning of gene expression in carrot?

2019/33/B/NZ9/00757

Keywords:

Carrot Daucus carota transposable elements MITE regulation of gene expression transcriptome sRNA methylation

Descriptors:

  • NZ9_004:
  • NZ2_002:
  • NZ9_013:

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Uniwersytet Rolniczy im. Hugona Kołłątaja w Krakowie, Wydział Biotechnologii i Ogrodnictwa

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Alicja Katarzyna Macko-Podgórni 

Number of co-investigators in the project: 8

Call: OPUS 17 - announced on 2019-03-15

Amount awarded: 814 469 PLN

Project start date (Y-m-d): 2020-02-25

Project end date (Y-m-d): 2025-02-24

Project duration:: 60 months (the same as in the proposal)

Project status: Project completed

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (4)
  1. A Global Landscape of Miniature Inverted-Repeat Transposable Elements in the Carrot Genome
    Authors:
    Macko-Podgórni A., Machaj G., Grzebelus D.
    Academic press:
    Genes (rok: 2021, tom: 12(6), strony: 859), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/genes12060859 - link to the publication
  2. Diverse and mobile: eccDNA‐based identification of carrot low‐copy‐number LTR retrotransposons active in callus cultures
    Authors:
    Kwolek, K., Kędzierska, P., Hankiewicz, M., Mirouze, M., Panaud, O., Grzebelus, D., & Macko‐Podgórni, A.
    Academic press:
    The Plant Journal (rok: 2022, tom: 110(6), strony: 1811-1828), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1111/tpj.15773 - link to the publication
  3. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots
    Authors:
    20. Coe, K., Bostan, H., Rolling, W., Turner-Hissong, S., Macko-Podgórni, A., Senalik, D., Liu, S., Seth, R., Curaba, J., Mengist, M.F., Grzebelus, D., Van Deynze, A., Dawson, J., Ellison, S., Simon, P., Iorizzo, M.
    Academic press:
    Nature Plants (rok: 2023, tom: 9(10), strony: 1643-1658), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41477-023-01526-6 - link to the publication
  4. Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots
    Authors:
    20. Coe, K., Bostan, H., Rolling, W., Turner-Hissong, S., Macko-Podgórni, A., Senalik, D., Liu, S., Seth, R., Curaba, J., Mengist, M.F., Grzebelus, D., Van Deynze, A., Dawson, J., Ellison, S., Simon, P., Iorizzo, M.
    Academic press:
    Nature Plants (rok: 2023, tom: 9(10), strony: 1643-1658), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41477-023-01526-6 - link to the publication

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