Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Zastosowanie metod uczenia maszynowego i symulacji molekularnych w badaniu zależności pomiędzy sekwencją, strukturą a funkcją białek

2019/32/T/NZ1/00323

Keywords:

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_8: Computational biology
  • NZ1_4: Structural biology

Panel:

NZ1 - Molecular biology, structural biology, biotechnology: molecular biology, structural biology, biotechnology

Host institution :

Instytut Biologii Doświadczalnej im. Marcelego Nenckiego Polskiej Akademii Nauk

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Jan Ludwiczak 

Number of co-investigators in the project: 2

Call: ETIUDA 7 - announced on 2018-12-14

Amount awarded: 125 840 PLN

Project start date (Y-m-d): 2019-10-01

Project end date (Y-m-d): 2020-09-30

Project duration:: 12 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (5)
  1. C8J_1298, a bifunctional thiol oxidoreductase of Campylobacter jejuni, affects Dsb (disulfide bond) network functioning
    Authors:
    A. Banaś, K. Bocian-Ostrzycka, M. Plichta, S. Dunin-Horkawicz, J. Ludwiczak, J. Płaczkiewicz, E. Jagusztyn-Krynicka
    Academic press:
    PLOS One (rok: 2020, tom: 15, strony: e0230366), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0230366 - link to the publication
  2. Self-analysis of repeat proteins reveals evolutionarily conserved patterns
    Authors:
    M. Merski, K. Młynarczyk, J. Ludwiczak, J. Skrzeczkowski, S. Dunin-Horkawicz, MW. Górna
    Academic press:
    BMC Bioinformatics (rok: 2020, tom: 21, strony: 179-196), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12859-020-3493-y - link to the publication
  3. A library of coiled-coil domains: from regular bundles to peculiar twists
    Authors:
    K. Szczepaniak, A. Bukala, A.M. da Silva Neto, J. Ludwiczak, S. Dunin-Horkawicz
    Academic press:
    Bioinformatics (rok: 2020, tom: 36, strony: 5368-5376), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btaa1041 - link to the publication
  4. β-sheet breakers with consecutive phenylalanines: Insights into mechanism of dissolution of β-amyloid fibrils
    Authors:
    A. Jarmuła, J. Ludwiczak, D. Stępkowski
    Academic press:
    Proteins: Structure, Function, and Bioinformatics (rok: 2021, tom: 89, strony: 762-780), Wydawca: Wiley Periodicals LLC
    Status:
    Published
    DOI:
    10.1002/prot.26057 - link to the publication
  5. Revealing biophysical properties of KfrA-type proteins as a novel class of cytoskeletal, coiled-coil plasmid-encoded proteins
    Authors:
    M. Adamczyk, E. Lewicka, R. Szatkowska, H. Nieznanska, J. Ludwiczak, M. Jasiński, S. Dunin-Horkawicz, E. Sitkiewicz, B. Swiderska, G. Goch, G. Jagura-Burdzy
    Academic press:
    BMC Microbiology (rok: 2021, tom: 21, strony: 32), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12866-020-02079-w - link to the publication

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