Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Prediction of protein and peptide isoelectric point based on sequence and structure features

2018/29/B/NZ2/01403

Keywords:

bioinformatics proteomics machine learning isoelectric point deep learning

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_3: Proteomics
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Łukasz Kozłowski 

Number of co-investigators in the project: 3

Call: OPUS 15 - announced on 2018-03-15

Amount awarded: 662 170 PLN

Project start date (Y-m-d): 2019-01-10

Project end date (Y-m-d): 2022-01-09

Project duration:: 36 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Oprogramowanie: MS Office (3 szt.) (300 PLN)
  2. Komputer stacjonarny dla kierownika grantu (1 102 PLN)
  3. Laptop (5 000 PLN)
  4. Serwer obliczeniowy (50 000 PLN)
  5. Komputer stacjonarny (student 1 & 2) (2 szt.) (8 000 PLN)
  6. Oprogramowanie: Endnote X8 (950 PLN)
  7. Oprogramowanie: Windows 10 (3 szt.) (300 PLN)

Information in the final report

  • Publication in academic press/journals (2)
  1. Proteome-pI 2.0: proteome isoelectric point database update
    Authors:
    Lukasz Pawel Kozlowski
    Academic press:
    Nucleic Acids Research (rok: 2022, tom: 50, strony: D1535–D1540), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkab944 - link to the publication
  2. IPC 2.0: prediction of isoelectric point and pKa dissociation constants
    Authors:
    Lukasz Pawel Kozlowski
    Academic press:
    Nucleic Acids Research (rok: 2021, tom: 49, strony: W285–W292), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkab295 - link to the publication

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