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Fast isogeometric finite element method solver as a key component in supermodeling of cancer proliferation

2016/21/B/ST6/01539

Keywords

Descriptors

  • ST6_12: Obliczenia naukowe, narzędzia modelowania i symulacji

Panel

ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Informatyki, Elektroniki i Telekomunikacji

Voivodeship: małopolskie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr hab. Maciej Paszyński

Number of co-investigators in the project: 4

Call

OPUS 11 – announced on 2016-03-15

Amount awarded
499 200 PLN
Project start date
2017-01-24
Project end date
2020-01-23
Project duration
36 months (the same as in the proposal)
Project status
Project settled

Project description

Download the project description in a pdf file

Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

Publication in academic press/journals (7)

  1. Parallel fast isogeometric L2 projection solver with GALOIS system for 3D tumor growth simulations

    Authors:
    Marcin Łoś, Adrian Kłusek, Muhamm Amber Hassaan, Keshav Pingali, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Computer Methods in Applied Mechanics and Engineering (year: 2019, volume: 343, pages: 46044), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.cma.2018.08.036 – link to the publication

  2. IGA-ADS: isogeometric analysis FEM using ADS solver

    Authors:
    Marcin Łoś, Maciej Woźniak, Maciej Paszyński, Andrew Lenharth, Muhamm Amber Hassaan, Keshav Pingali
    Academic press:
    Computer & Physics Communications (year: 2017, volume: 217, pages: 99-116), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.cpc.2017.02.023 – link to the publication

  3. Parallel splitting solvers for the isogeometric analysis of the Cahn-Hilliard equation

    Authors:
    Vladimir Puzyrev, Marcin Łoś, Grzegorz Gurgul, Victor Calo, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Computer Methods in Biomechanics and Biomedical Engineering (year: 2019, volume: 22(16), pages: 1269-1281), Publisher: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/10255842.2019.1661388 – link to the publication

  4. Concurrency of three-dimensional refined isogeometric analysis

    Authors:
    Maciej Paszynski, Leszek Siwik, Maciej Woźniak
    Academic press:
    Parallel Computing (year: 2018, volume: 80, pages: 46044), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.parco.2018.10.005 – link to the publication

  5. Parallel refined Isogeometric Analysis in 3D

    Authors:
    Leszek Siwik, Maciej Woźniak, Victor Trujillo, David Pardo, Victor Manuel Calo, Maciej Paszyński
    Academic press:
    IEEE Transactions on Parallel and Disributed Systems (year: 2019, volume: 30, pages: 1134-1142), Publisher: IEEE
    Status:
    Published
    DOI:
    10.1109/TPDS.2018.2879664 – link to the publication

  6. Efficient model of tumor dynamics simulated in multi-GPU environment

    Authors:
    Adrian Kłusek, Marcin Łoś, Maciej Paszyński, Witold Dzwinel
    Academic press:
    The International Journal of High Performance Computing Applications (year: 2019, volume: 33(3), pages: 489-506), Publisher: SAGE
    Status:
    Published
    DOI:
    10.1177/1094342018816772 – link to the publication

  7. Supermodeling in predictive diagnostics of cancer under treatment

    Authors:
    Witold Dzwinel, Adrian Kłusek, Leszek Siwik
    Status:
    Accepted for publication

Articles in post-conference publications (16)

  1. Computer modeling of cancer evolution. Toy or tool?

    Authors:
    Witold Dzwinel
    Conference:
    Mechanisms and Models of Cancer (year: 2018, pages: 46024), Publisher: Cold Spring Harbor Laboratory, Long Island, USA
    Date:
    conference 14-18 sierpnia
    Status:
    Published

  2. Multi-GPU Implementation of Isogeometric Finite Element Solver for Tumor Simulations

    Authors:
    Adrian Klusek, Marcin Łoś, Witold Dzwinel, Maciej Paszynski
    Conference:
    15th U.S. National Congress on Computational Mechanics (year: 2019, pages: 281), Publisher: US Association of Computational Mechanics (USACM)
    Date:
    conference 28 lipca-1 sierpnia
    Status:
    Published

  3. Isogeometric L2 projections for patient specic tumor growth simulations

    Authors:
    Marcin Łoś, Leszek Siwik, Adrian Kłusek, Witold Dzwinel, Maciej Paszyński
    Conference:
    Emerging Trends in Applied Mathematics and Mechanics (year: 2018, pages: 1), Publisher: Jagiellonian University
    Date:
    conference 18-22 czerwca
    Status:
    Published

  4. Particle automata model of renal cancer progression

    Authors:
    Marta Panuszewska, Bartosz Minch, Rafał Wcisło, Witold Dzwinel
    Conference:
    International Interdisciplinary PhD Workshop 2018 (year: 2018, pages: 46025), Publisher: Proceedings of International Interdisciplinary PhD Workshop 2018 Świnoujscie
    Date:
    conference 9-12 Maja
    Status:
    Published

  5. Tunning Two-Dimensional Tumor Growth Simulations

    Authors:
    Leszek Siwik, Marcin Łoś, Adrian Kłusek, Witold Dzwinel, Maciej Paszyński
    Conference:
    Summer Simulation Multi-Conference (year: 2018, pages: 46034), Publisher: Society for Modeling & Simulation International (SCS)
    Date:
    conference 9-12 czerwca
    Status:
    Published

  6. SuperNet: Using Supermodeling in Developing More Efficient Data Models

    Authors:
    A. Kolonki, P. Wandzel, K. Zuchniak. G. Duane, W. Dzwinel
    Conference:
    The V International AMMCS Interndisciplinary Conference, Waterloo, Kanada (year: 2019, pages: 413), Publisher: MS2Discovery Institute
    Date:
    conference 18-23 lipca
    Status:
    Published

  7. SuperNet: Using Supermodeling in Developing More Efficient Data Models

    Authors:
    A. Kolonko, P. Wandzel, K. Zuchniak, G. Duane, W. Dzwinel
    Conference:
    The V International AMMCS Interdisciplinary Conference, Waterloo, Ontario, Canada (year: 2019, pages: 118), Publisher: Interdisciplinary AMMCS Conference Series
    Date:
    conference 18-23 sierpnia
    Status:
    Published

  8. Supermodeling - A Meta-procedure for Data Assimilation and Parameters Estimation

    Authors:
    Leszek Siwik, Marcin Łoś, Witold Dzwinel
    Conference:
    International Conference on Computational Science ICCS 2021 (year: 2021, pages: 358-372), Publisher: Springer
    Date:
    conference 16-18 czerwca 2021
    Status:
    Published

  9. Supermodeling as the Second Level of Abstraction in Data Assimilation for Dynamic Systems

    Authors:
    Witold Dzwinel, Adrian Kłusek, Gregory Duane
    Conference:
    2019 SIAM Conference on Dynamical Systems and SIAM Workshop on Network Science (year: 2019, pages: 1), Publisher: SIAM
    Date:
    conference Maj 19-23
    Status:
    Published

  10. Supermodeling: The Next Level of Abstraction in the Use of Data Assimilation

    Authors:
    Marcin Sendera, Gregory Duane, Witold Dzwinel
    Conference:
    International Conference on Computational Science ICCS 2020 (year: 2020, pages: 133-147), Publisher: Lecture Notes in Computer Science
    Date:
    conference 3-5 czerwca
    Status:
    Published

  11. Optimization of Execution Time, Energy Consumption, and Accuracy during Finite Element Method Simulations

    Authors:
    Maciej Woźniak, Marcin Łoś, Leszek Siwik, Dariusz Król, Maciej Paszyński
    Conference:
    Konferencja Użytkowników Komputerów Dużej Mocy KUKDM (year: 2017, pages: 46024), Publisher: Cyfronet
    Date:
    conference Zakopane 8-10 marca
    Status:
    Published

  12. Discrete 3D model of tumor dynamics in presence of anti- tumor treatment

    Authors:
    Marta Panuszewska, Bartosz Minch, Bafał Wcisło, Witold Dzwinel
    Conference:
    ACRI International Conference (year: 2018, pages: 46025), Publisher: Lecture Notes in Computer Science 11115
    Date:
    conference 17-21 wrzesień
    Status:
    Published

  13. Three-Dimensional Isogeometric Tumor Growth Simulations

    Authors:
    Marcin Łoś, Maciej Paszyński, Monika Tomkowicz, Adrian Kłusek, Witold Dzwinel
    Conference:
    International Conference on Isogeometric Analysis, IGA 2017, Pavia (year: 2017, pages: 1), Publisher: CIMNE
    Date:
    conference 11-13 września
    Status:
    Published

  14. Algorithms for construction of Element Partition Trees for Direct Solver executed over h refined grids with B-splines and C0 separators

    Authors:
    Bartosz Janota, Maciej Paszynski
    Conference:
    International Conference on Computational Science ICCS 2017 (year: 2017, pages: 857-866), Publisher: Elsevier
    Date:
    conference 12-14 czerwiec
    Status:
    Published

  15. A concept of a prognostic system for personalized anti-tumor therapy based on supermodeling

    Authors:
    Witold Dzwinel, Adrian Kłusek, Maciej Paszynski
    Conference:
    International Conference on Computational Science ICCS 2017 (year: 2017, pages: 1832-1841), Publisher: Elsevier
    Date:
    conference 12-14 czerwca
    Status:
    Published

  16. Computational cost of two alternative formulations of Cahn-Hilliard equations

    Authors:
    Maciej Paszynski, Grzegorz Gurgul, Marcin Łoś, Danuta Szeliga
    Conference:
    21ST INTERNATIONAL ESAFORM CONFERENCE ON MATERIAL FORMING (ESAFORM 2018) (year: 2018, pages: 090009-1 - 090009-6), Publisher: AIP Conference Proceedings 1960, 090009
    Date:
    conference 23-25 kwietnia, Palermo, Włochy
    Status:
    Published

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Graphic design and implementation: Jakub Piotrowski