Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Fast isogeometric finite element method solver as a key component in supermodeling of cancer proliferation

2016/21/B/ST6/01539

Keywords:

isogeometric finite element method fast direct solver supermodeling of cancer proliferation

Descriptors:

  • ST6_12: Scientific computing, simulation and modelling tools

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Informatyki, Elektroniki i Telekomunikacji

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Maciej Paszyński 

Number of co-investigators in the project: 4

Call: OPUS 11 - announced on 2016-03-15

Amount awarded: 499 200 PLN

Project start date (Y-m-d): 2017-01-24

Project end date (Y-m-d): 2020-01-23

Project duration:: 36 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (10)
  • Articles in post-conference publications (16)
  1. IGA-ADS: isogeometric analysis FEM using ADS solver
    Authors:
    Marcin Łoś, Maciej Woźniak, Maciej Paszyński, Andrew Lenharth, Muhamm Amber Hassaan, Keshav Pingali
    Academic press:
    Computer & Physics Communications (rok: 2017, tom: 217, strony: 99-116), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.cpc.2017.02.023 - link to the publication
  2. Parallel refined Isogeometric Analysis in 3D
    Authors:
    Leszek Siwik, Maciej Woźniak, Victor Trujillo, David Pardo, Victor Manuel Calo, Maciej Paszyński
    Academic press:
    IEEE Transactions on Parallel and Disributed Systems (rok: 2019, tom: 30, strony: 1134-1142), Wydawca: IEEE
    Status:
    Published
    DOI:
    10.1109/TPDS.2018.2879664 - link to the publication
  3. Efficient model of tumor dynamics simulated in multi-GPU environment
    Authors:
    Adrian Kłusek, Marcin Łoś, Maciej Paszyński, Witold Dzwinel
    Academic press:
    The International Journal of High Performance Computing Applications (rok: 2019, tom: 33(3), strony: 489-506), Wydawca: SAGE
    Status:
    Published
    DOI:
    10.1177/1094342018816772 - link to the publication
  4. Parallel splitting solvers for the isogeometric analysis of the Cahn-Hilliard equation
    Authors:
    Vladimir Puzyrev, Marcin Łoś, Grzegorz Gurgul, Victor Calo, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Computer Methods in Biomechanics and Biomedical Engineering (rok: 2019, tom: 22(16), strony: 1269-1281), Wydawca: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/10255842.2019.1661388 - link to the publication
  5. Supermodeling in predictive diagnostics of cancer under treatment
    Authors:
    Witold Dzwinel, Adrian Kłusek, Leszek Siwik
    Academic press:
    Computers in Biology and Medicine (rok: 2021, tom: -, strony: 45315), Wydawca: Elsevier
    Status:
    Accepted for publication
    DOI:
    brak - link to the publication
  6. Higher order and continuity L2 projections with piece-wise constant test functions
    Authors:
    Maciej Paszyński, Marcin Łoś
    Academic press:
    Journal of Computational Science (rok: 2021, tom: -, strony: 17533), Wydawca: Elsevier
    Status:
    Submitted
    DOI:
    brak - link to the publication
  7. Tunning three-dimensional tumor progression simulations on a cluster of GPGPUs
    Authors:
    Leszek Siwik, Marcin Łoś, Adrian Kłusek, Anna Paszyńska, Keshav Pingali, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Journal of Computational and Applied Mathematics (rok: 2021, tom: -, strony: 17168), Wydawca: Elsevier
    Status:
    Submitted
    DOI:
    brak - link to the publication
  8. Concurrency of three-dimensional refined isogeometric analysis
    Authors:
    Maciej Paszynski, Leszek Siwik, Maciej Woźniak
    Academic press:
    Parallel Computing (rok: 2018, tom: 80, strony: 45313), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.005 - link to the publication
  9. Parallel fast isogeometric L2 projection solver with GALOIS system for 3D tumor growth simulations
    Authors:
    Marcin Łoś, Adrian Kłusek, Muhamm Amber Hassaan, Keshav Pingali, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Computer Methods in Applied Mechanics and Engineering (rok: 2019, tom: 343, strony: 45313), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.cma.2018.08.036 - link to the publication
  10. Supermodeling, a convergent data assimilation meta-procedure used in simulation of tumor progression
    Authors:
    Maciej Paszynski, Leszek Siwik, Witold Dzwinel, Keshav Pingali
    Academic press:
    Computers and Mathematics with Applications (rok: 2021, tom: -, strony: 45320), Wydawca: Elsevier
    Status:
    Submitted
    DOI:
    brak - link to the publication
  1. Computational cost of two alternative formulations of Cahn-Hilliard equations
    Authors:
    Maciej Paszynski, Grzegorz Gurgul, Marcin Łoś, Danuta Szeliga
    Conference:
    21ST INTERNATIONAL ESAFORM CONFERENCE ON MATERIAL FORMING (ESAFORM 2018) (rok: 2018, ), Wydawca: AIP Conference Proceedings 1960, 090009
    Data:
    konferencja 23-25 kwietnia, Palermo, Włochy
    Status:
    Published
  2. Isogeometric L2 projections for patient specic tumor growth simulations
    Authors:
    Marcin Łoś, Leszek Siwik, Adrian Kłusek, Witold Dzwinel, Maciej Paszyński
    Conference:
    Emerging Trends in Applied Mathematics and Mechanics (rok: 2018, ), Wydawca: Jagiellonian University
    Data:
    konferencja 18-22 czerwca
    Status:
    Published
  3. Particle automata model of renal cancer progression
    Authors:
    Marta Panuszewska, Bartosz Minch, Rafał Wcisło, Witold Dzwinel
    Conference:
    International Interdisciplinary PhD Workshop 2018 (rok: 2018, ), Wydawca: Proceedings of International Interdisciplinary PhD Workshop 2018 Świnoujscie
    Data:
    konferencja 9-12 Maja
    Status:
    Published
  4. SuperNet: Using Supermodeling in Developing More Efficient Data Models
    Authors:
    A. Kolonko, P. Wandzel, K. Zuchniak, G. Duane, W. Dzwinel
    Conference:
    The V International AMMCS Interdisciplinary Conference, Waterloo, Ontario, Canada (rok: 2019, ), Wydawca: Interdisciplinary AMMCS Conference Series
    Data:
    konferencja 18-23 sierpnia
    Status:
    Published
  5. Tunning Two-Dimensional Tumor Growth Simulations
    Authors:
    Leszek Siwik, Marcin Łoś, Adrian Kłusek, Witold Dzwinel, Maciej Paszyński
    Conference:
    Summer Simulation Multi-Conference (rok: 2018, ), Wydawca: Society for Modeling & Simulation International (SCS)
    Data:
    konferencja 9-12 czerwca
    Status:
    Published
  6. Discrete 3D model of tumor dynamics in presence of anti- tumor treatment
    Authors:
    Marta Panuszewska, Bartosz Minch, Bafał Wcisło, Witold Dzwinel
    Conference:
    ACRI International Conference (rok: 2018, ), Wydawca: Lecture Notes in Computer Science 11115
    Data:
    konferencja 17-21 wrzesień
    Status:
    Published
  7. Supermodeling as the Second Level of Abstraction in Data Assimilation for Dynamic Systems
    Authors:
    Witold Dzwinel, Adrian Kłusek, Gregory Duane
    Conference:
    2019 SIAM Conference on Dynamical Systems and SIAM Workshop on Network Science (rok: 2019, ), Wydawca: SIAM
    Data:
    konferencja Maj 19-23
    Status:
    Published
  8. Three-Dimensional Isogeometric Tumor Growth Simulations
    Authors:
    Marcin Łoś, Maciej Paszyński, Monika Tomkowicz, Adrian Kłusek, Witold Dzwinel
    Conference:
    International Conference on Isogeometric Analysis, IGA 2017, Pavia (rok: 2017, ), Wydawca: CIMNE
    Data:
    konferencja 11-13 września
    Status:
    Published
  9. Algorithms for construction of Element Partition Trees for Direct Solver executed over h refined grids with B-splines and C0 separators
    Authors:
    Bartosz Janota, Maciej Paszynski
    Conference:
    International Conference on Computational Science ICCS 2017 (rok: 2017, ), Wydawca: Elsevier
    Data:
    konferencja 12-14 czerwiec
    Status:
    Published
  10. Computer modeling of cancer evolution. Toy or tool?
    Authors:
    Witold Dzwinel
    Conference:
    Mechanisms and Models of Cancer (rok: 2018, ), Wydawca: Cold Spring Harbor Laboratory, Long Island, USA
    Data:
    konferencja 14-18 sierpnia
    Status:
    Published
  11. Optimization of Execution Time, Energy Consumption, and Accuracy during Finite Element Method Simulations
    Authors:
    Maciej Woźniak, Marcin Łoś, Leszek Siwik, Dariusz Król, Maciej Paszyński
    Conference:
    Konferencja Użytkowników Komputerów Dużej Mocy KUKDM (rok: 2017, ), Wydawca: Cyfronet
    Data:
    konferencja Zakopane 8-10 marca
    Status:
    Published
  12. SuperNet: Using Supermodeling in Developing More Efficient Data Models
    Authors:
    A. Kolonki, P. Wandzel, K. Zuchniak. G. Duane, W. Dzwinel
    Conference:
    The V International AMMCS Interndisciplinary Conference, Waterloo, Kanada (rok: 2019, ), Wydawca: MS2Discovery Institute
    Data:
    konferencja 18-23 lipca
    Status:
    Published
  13. Supermodeling - A Meta-procedure for Data Assimilation and Parameters Estimation
    Authors:
    Leszek Siwik, Marcin Łoś, Witold Dzwinel
    Conference:
    International Conference on Computational Science ICCS 2021 (rok: 2021, ), Wydawca: Springer
    Data:
    konferencja 16-18 czerwca 2021
    Status:
    Published
  14. Multi-GPU Implementation of Isogeometric Finite Element Solver for Tumor Simulations
    Authors:
    Adrian Klusek, Marcin Łoś, Witold Dzwinel, Maciej Paszynski
    Conference:
    15th U.S. National Congress on Computational Mechanics (rok: 2019, ), Wydawca: US Association of Computational Mechanics (USACM)
    Data:
    konferencja 28 lipca-1 sierpnia
    Status:
    Published
  15. Supermodeling: The Next Level of Abstraction in the Use of Data Assimilation
    Authors:
    Marcin Sendera, Gregory Duane, Witold Dzwinel
    Conference:
    International Conference on Computational Science ICCS 2020 (rok: 2020, ), Wydawca: Lecture Notes in Computer Science
    Data:
    konferencja 3-5 czerwca
    Status:
    Published
  16. A concept of a prognostic system for personalized anti-tumor therapy based on supermodeling
    Authors:
    Witold Dzwinel, Adrian Kłusek, Maciej Paszynski
    Conference:
    International Conference on Computational Science ICCS 2017 (rok: 2017, ), Wydawca: Elsevier
    Data:
    konferencja 12-14 czerwca
    Status:
    Published

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