Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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A bioinformatic analysis of leg and hoof disease in cattle with the emphasis on epistasis

2015/19/B/NZ9/03725

Keywords:

association analysis cattle epistasis hoof and leg disease SNP chip

Descriptors:

  • NZ9_2: Animal production
  • NZ2_7: Bioinformatics
  • NZ2_8: Computational biology

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Uniwersytet Przyrodniczy we Wrocławiu, Wydział Biologii i Hodowli Zwierząt

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Joanna Szyda 

Number of co-investigators in the project: 4

Call: OPUS 10 - announced on 2015-09-15

Amount awarded: 362 900 PLN

Project start date (Y-m-d): 2016-06-15

Project end date (Y-m-d): 2019-11-14

Project duration:: 41 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. wymiana procesorów serwera obliczeniowego (minimalne paramtery procesora: Intel Xeon E5-2440, 2.4GHz, 6 rdzeni, 15 MB) (12 000 PLN)
  2. Komputer przenośny (5 890 PLN)
  3. komputer przenośny (6 000 PLN)
  4. rozbudowa pamięci serwera obliczeniowego (minimalne paramtery modułu 16 GB, 1600MHz) (8 500 PLN)
  5. uzupełnienie przestrzeni dyskowej serwera obliczeniowego (minimalne paramtery dysku 1TB) (10 000 PLN)

Information in the final report

  • Publication in academic press/journals (2)
  • Articles in post-conference publications (2)
  1. Two-stage GWAS for the identification of causal variants underlying hoof disorders in cattle
    Authors:
    Tomasz Suchockil, Christa Egger-Danner, Herman Schwarzenbacher, Joanna Szyda
    Academic press:
    Journal of Dairy Science (rok: 2020, tom: 103, strony: 4483-4494), Wydawca: ELSEVIER SCIENCE INC
    Status:
    Published
    DOI:
    10.3168/jds.2019-17542 - link to the publication
  2. Exploring the Potential Genetic Heterogeneity in the Incidence of Hoof Disorders in Austrian Fleckvieh and Braunvieh Cattle
    Authors:
    Barbara Kosinska-Selbi, Tomasz Suchocki, Christa Egger-Danner, Hermann Schwarzenbacher, Magdalena Fraszczak, Joanna Szyda
    Academic press:
    Frontiers in Genetics (rok: 2020, tom: 11, strony: 1423), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fgene.2020.577116 - link to the publication
  1. Genome-wide association study for leg disorders in Austrian Braunvieh and Fleckvieh
    Authors:
    B. Kosińska-Selbi, T. Suchocki, M. Frąszczak, C.H. Egger-Danner, H. Schwarzenbacher and J. Szyda
    Conference:
    Book of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science (rok: 2019, ), Wydawca: Wageningen Academic Publishers
    Data:
    konferencja 26.08. – 30.08.2019
    Status:
    Published
  2. Combining SNP-chip and whole genome sequence data towards the identification of causal mutations underlying feet and leg disorders in cattle
    Authors:
    T. Suchocki, Ch. Egger-Danner, H. Schwarzenbacher, M. Mielczarek, J. Szyda
    Conference:
    World Congress on Genetics Applied to Livestock Production (rok: 2018, ), Wydawca: Proceedings of the World Congress on Genetics Applied to Livestock Production,
    Data:
    konferencja 11-16.02.2018
    Status:
    Published

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