Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Inferring genomic duplication events.

2015/19/N/ST6/01193

Keywords:

genomic duplication duplication episode reconciliation unrooted gene tree species tree

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • NZ2_2: Genomics, transcriptomics, epigenomics

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Jarosław Paszek 

Number of co-investigators in the project: 2

Call: PRELUDIUM 10 - announced on 2015-09-15

Amount awarded: 77 000 PLN

Project start date (Y-m-d): 2016-06-28

Project end date (Y-m-d): 2018-06-27

Project duration:: 24 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Komputer przenośny + akcesoria (5 000 PLN)

Information in the final report

  • Publication in academic press/journals (2)
  • Book publications / chapters in book publications (1)
  1. Efficient Algorithms for Genomic Duplication Models
    Authors:
    Jarosław Paszek, Paweł Górecki
    Academic press:
    IEEE-ACM Transactions on Computational Biology and Bioinformatics (rok: 2018, tom: 15(5), strony: 1515-1524), Wydawca: IEEE Computer Society, IEEE Computational Intelligence Society, IEEE Control Systems Society, IEEE Engineering in Medicine and Biology Society, The Association for Computing Machinery
    Status:
    Published
    DOI:
    10.1109/TCBB.2017.2706679; - link to the publication
  2. Inferring Duplication Episodes from Unrooted Gene Trees
    Authors:
    Jarosław Paszek, Paweł Górecki
    Academic press:
    BMC Genomics (rok: 2018, tom: 19 (Suppl 5), strony: 288), Wydawca: BIOMED CENTRAL LTD
    Status:
    Published
    DOI:
    10.1186/s12864-018-4623-z - link to the publication
  1. New Algorithms for the Genomic Duplication Problem
    Authors:
    Jarosław Paszek, Paweł Górecki
    Book:
    Meidanis J., Nakhleh L. (eds) Comparative Genomics. RECOMB-CG 2017. Lecture Notes in Computer Science. (rok: 2017, tom: 10562, strony: 101-115), Wydawca: Springer
    Status:
    Published

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