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eVOLUTUS: the simulator of multiscale evolutionary processes tested on Foraminifera

2013/09/B/ST10/01734

Keywords

Descriptors

  • ST10_8: Paleontologia, stratygrafia, geochronologia
  • ST10_15: Paleoklimatologia, paleoekologia

Panel

ST10 – Earth sciences: Earth system science, atmospheric sciences, climatology, geochemistry, geodesy, geoecology, geophysics, physical geography, geoinformatics, planetary geology, pedology, mining, chemical and physical oceanology, environmental protection

Host institution

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Informatyki, Elektroniki i Telekomunikacji

Voivodeship: małopolskie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr Paweł Jarosław Topa

Number of co-investigators in the project: 6

Call

OPUS 5 – announced on 2013-03-15

Amount awarded
441 395 PLN
Project start date
2014-03-04
Project end date
2017-12-03
Project duration
45 months (the same as in the proposal)
Project status
Project settled

Equipment purchased [PL]

  1. CRUCIAL 8GB 1600MHz DDR3, POL-0000-08/15.
  2. Kompilator C++Builder XE4 Professional. Cost: 4 730 PLN
  3. Komputery mobilne (4 pcs). Cost: 15 200 PLN
  4. Oprogramowanie do wizualizacji danych naukowych 3D - Amira. Cost: 26 000 PLN
  5. Samsung dysk SSD 850 EVO 250GB, POL-0000-08/16.
  6. upgrade kompilatora i środowiska programistycznego Borland C++. Cost: 5 688 PLN

Information in the final report

Publication in academic press/journals (3)

  1. Modelling ecology and evolution of Foraminifera in the agent-oriented distributed platform

    Authors:
    Paweł Topa, Łukasz Faber, Jarosław Tyszka, Maciej Komosinski
    Academic press:
    Journal of Computational Science (year: 2017, volume: 18, pages: 69-84), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.jocs.2016.07.009 – link to the publication

  2. Multithreaded computing in evolutionary design and in artificial life simulations

    Authors:
    Maciej Komosinski, Szymon Ulatowski
    Academic press:
    The Journal of Supercomputing (year: 2016, volume: 73, pages: 2214–2228), Publisher: Springer
    Status:
    Published
    DOI:
    10.1007/s11227-016-1923-4 – link to the publication

  3. Multi-agent simulation of benthic foraminifera response to annual variability of feeding fluxes

    Authors:
    Maciej Komosinski, Agnieszka Mensfelt, Jarosław Tyszka, Jan Goleń
    Academic press:
    Journal of Computational Science (year: 2017, volume: 21, pages: 419-431), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.jocs.2016.09.009 – link to the publication

Articles in post-conference publications (10)

  1. eVolutus: A new platform for evolutionary experiments

    Authors:
    Paweł Topa, Maciej Komosiński, Jarosław Tyszka, Agnieszka Mensfelt, Sebastian Rokitta, Maciej Bassara
    Conference:
    Parallel Processing and Applied Mathematics PPAM 2015 (year: 2016, pages: 570-580), Publisher: Springer
    Date:
    conference October 6-9, 2015
    Status:
    Published

  2. Crossing scales in modelling of foraminifera

    Authors:
    Jarosław Tyszka, Maciej Komosiński, Paweł Topa, Sebastian Rokitta
    Conference:
    Foraminifera and Nannofossil Groups Joint Spring Meeting 2014 (year: 2014, pages: 44), Publisher: NIOZ Royal Netherlands Institute for Sea Research
    Date:
    conference 2014
    Status:
    Published

  3. Constructing models of movement and sensing behaviour in foraminifera

    Authors:
    Jan Golen, Jarosław Tyszka, Maciej Komosinski, Agnieszka Mensfelt, Paweł Topa
    Conference:
    The Batsheva de Rothschild Workshop on Live foraminifera (year: 2016, pages: 43), Publisher: The Israel Academy of Sciences and Humanities
    Date:
    conference 10-16 wrzesień 2016
    Status:
    Published

  4. Chamber formation in globothalamean Foraminifera: from theoretical models to cytoskeleton staining experiments

    Authors:
    Jaroslaw Tyszka, Ulf Bickmeyer, Markus Raitzsch, Jelle Bijma, Paweł Topa, Karina Kaczmarek, Antje Mewes
    Conference:
    The Batsheva de Rothschild Workshop on Live foraminifera (year: 2016, pages: 80-81), Publisher: The Israel Academy of Sciences and Humanities
    Date:
    conference 10-16 wrzesień 2016
    Status:
    Published

  5. Tournament-based convection selection in evolutionary algorithms

    Authors:
    Maciej Komosinski i Konrad Miazga
    Conference:
    Parallel Processing and Applied Mathematics PPAM 2017 (year: 2018, pages: 466-475), Publisher: Springer
    Date:
    conference 10-13 September 2017
    Status:
    Published
    DOI:
    link to the publication

  6. Multi-Agent Systems programmed visually with Google Blockly

    Authors:
    Szymon Górowski, Robert Maguda and Paweł Topa
    Conference:
    Parallel Processing and Applied Mathematics PPAM 2017 (year: 2018, pages: 476--484), Publisher: Springer
    Date:
    conference 10-13 September 2017
    Status:
    Published
    DOI:
    link to the publication

  7. Towards Multi-Agent simulations accelerated using GPU

    Authors:
    Kamil Piętak and Paweł Topa
    Conference:
    Parallel Processing and Applied Mathematics PPAM 2017 (year: 2018, pages: 456-465), Publisher: Springer
    Date:
    conference 10-13 September 2017
    Status:
    Published

  8. Agent-oriented Foraminifera Habitat Simulation

    Authors:
    Maciej Kaziród, Wojciech Korczyński, Elias Fernandez, Aleksander Byrski, Marek Kisiel-Dorohinicki, Pawel Topa, Jaroslaw Tyszka, Maciej Komosiński
    Conference:
    International Conference on Computational Science ICCS 2015 (year: 2015, pages: 1062-1071), Publisher: Elsevier
    Date:
    conference 1-3 June, 2015
    Status:
    Published

  9. Application of a Morphological Similarity Measure to the Analysis of Shell Morphogenesis in Foraminifera

    Authors:
    Maciej Komosinski, Agnieszka Mensfelt, Paweł Topa, Jarosław Tyszka
    Conference:
    International Conference on Man–Machine Interactions 4, ICMMI 2015 (year: 2015, pages: 215-224), Publisher: Springer
    Date:
    conference October 6-9, 2015
    Status:
    Published

  10. eVolutus: A Configurable Platform Designed for Ecological and Evolutionary Experiments Tested on Foraminifera

    Authors:
    Paweł Topa, Maciej Komosinski, Maciej Bassara, Jarosław Tyszka
    Conference:
    International Conference on Man–Machine Interactions 4, ICMMI 2015 (year: 2015, pages: 269-278), Publisher: Springer
    Date:
    conference 2015
    Status:
    Published

Book publications / chapters in book publications (2)

  1. Narzędzia akwizycji, analizy i prezentacji danych pochodzących z symulacji dynamiki populacji i zmian ewolucyjnych

    Authors:
    Paweł Topa, Michał Begejowicz, Maciej Gaweł, Michał Krężelewski, Łukasz Oliwa, Eryk Zimończyk, Bartosz Żurkowski, Bubula Beata, Ciechanowski Dariusz, Wójcik Anna
    Book:
    Raport techniczny (year: 2017, volume: 42736, pages: 11689), Publisher: Katedra Informatyki, Akademia Górniczo-Hutnicza
    Status:
    Published

  2. Properties of genealogical trees, their correlation with parameters of evolutionary algorithms, and models of parent-child rank co-occurrence

    Authors:
    Konrad Miazga
    Book:
    Raport techniczny (year: 2017, volume: RA-10/17, pages: 46033), Publisher: Instytut Informatyki, Politechnika Poznańska
    Status:
    Published

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Graphic design and implementation: Jakub Piotrowski