Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

Delete all

Transcriptome analysis of bos taurus genome using next-generation sequencing technology

2012/05/B/NZ2/01629

Keywords:

liver pituitary gland Bos taurus de novo re-sequencing transcriptome

Descriptors:

  • NZ2_2:
  • NZ2_7:
  • NZ2_4:

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Mikołaja Kopernika w Toruniu, Wydział Biologii i Ochrony Środowiska

woj. kujawsko-pomorskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Chandra Shekhar Pareek 

Number of co-investigators in the project: 5

Call: OPUS 3 - announced on 2012-03-15

Amount awarded: 446 775 PLN

Project start date (Y-m-d): 2013-02-11

Project end date (Y-m-d): 2017-02-10

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (3)
  • Articles in post-conference publications (18)
  • Book publications / chapters in book publications (1)
  1. Single nucleotide polymorphism discovery in bovine liver using RNA-seq technology
    Authors:
    Pareek CS, Błaszczyk P, Dziuba P, Czarnik U, Fraser L, Sobiech P, Pierzchała M, Feng Y, Kadarmideen HN, Kumar D.
    Academic press:
    PLOS One (rok: 2017, tom: e0172687, strony: e0172687), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0172687. - link to the publication
  2. Investigation of candidate genes for metabolic disorders expressed in liver and pituitary gland by comparing the RNA-seq data of Polish-HF and Polish-Red cattle
    Authors:
    Wysocka D, Sobiech P, Herudzinska M, Sachajko M, Pareek CS
    Academic press:
    Translational Research in Veterinary Science (rok: 2018, tom: brak, strony: 1: 69-83), Wydawca: UMK, Torum
    Status:
    Published
    DOI:
    10.12775/TRVS.2018.004 - link to the publication
  3. Single Nucleotide Polymorphism Discovery in Bovine Pituitary Gland Using RNA-Seq Technology
    Authors:
    Chandra S. Pareek, Rafal Smoczynski, Haja Kadarmideen, Piotr Dziuba, Pawel Blaszczyk, Marcin Trzaska, Marcin Sikora, Tomasz Grzybowski, Mariusz Pierzchala, Jarosław Horbańczuk, Agnieszka Szostak, Magdalena Ogluszka, Urszula Czarnik, Leyland Fraser, Przymeslaw Sobiech, Krzysztof Wasowicz, Brian Gelfand, Feng Yaping, Dibyendu Kumar
    Academic press:
    PLOS One (rok: 2016, tom: 11 (9), strony: e0161370), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0161370 - link to the publication
  1. RNA-seq data analysis of bovine liver and pituitary transcriptome.
    Authors:
    Pareek CS, Smoczyński R., Dziuba P., Sikora M., Gołębiewski M., Yaping F., Kumar D.
    Conference:
    Proceedings of PAG XIII (rok: 2015, ), Wydawca: Plant and Animal Genome, San Diego, CA, USA.
    Data:
    konferencja Jan. 10-14, 2015
    Status:
    Published
    DOI:
    link to the publication
  2. Bos Taurus transcriptome analysis by RNA-seq.
    Authors:
    Chandra Shekhar Pareek
    Conference:
    Proceedings of 13th annual conference in bioinformatics (rok: 2013, ), Wydawca: The Society for Bioinformatics in Northern European countries (SocBiN) and the Polish Bioinformatics Society (Polskie Towarzystwo Bioinformatyczne / PTBI)
    Data:
    konferencja 26-29 Czerwiec
    Status:
    Published
  3. Amplicon sequencing of Bos Taurus transcriptome.
    Authors:
    Marcin Sikora, Marcin Gołębiewski, Piotr Dziuba, Rafał Smoczyński Chandra Shekhar Pareek
    Conference:
    14th annual conference in bioinformatics (rok: 2014, ), Wydawca: Polskie Towarzystwo Bioinformatyczne (PTBI), Warsaw, Poland
    Data:
    konferencja 12-14 June, 2014
    Status:
    Published
    DOI:
    link to the publication
  4. Gene expression analysis metabolome tissues in cattle breeds
    Authors:
    Pareek C.S. Sachajko M. Wieczorkiewicz M. Kulus J. Kulus M. Herudzinska M. Jaskowski J.M.
    Conference:
    Omics Circle (rok: 2018, ), Wydawca: Uniwersytet Mikołaja Kopernika, Toruń.
    Data:
    konferencja 26-28 October, 2018
    Status:
    Published
    DOI:
    link to the publication
  5. MAPOWANIE I ANALIZA TRANSKRYPTOMU BOS TAURUS Z WYKORZYSTANIEM RNA-SEQ.
    Authors:
    Piotr Dziuba, Marcin Sikora, Marcin Gołębiewski, Rafał Smoczyński Chandra Shekhar Pareek
    Conference:
    VIII Kopernikańskie Seminarium Doktoranckie (rok: 2014, ), Wydawca: Wydział Chemii UMK
    Data:
    konferencja 25-27 czerwca 2014r
    Status:
    Published
  6. Re-sequencing of Bos Taurus liver and pituitary gland transcriptome.
    Authors:
    Piotr Dziuba, Marcin Sikora, Marcin Gołębiewski, Rafał Smoczyński Chandra Shekhar Pareek (2014).
    Conference:
    14th annual conference in bioinformatics (rok: 2014, ), Wydawca: Polskie Towarzystwo Bioinformatyczne (PTBI), Warsaw, Poland
    Data:
    konferencja 12-14 June, 2014
    Status:
    Published
  7. Mapping of RNA-seq data generated from Bos Taurus Pituitary gland transcriptome.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Trzaska M, Blaszczyk P, Gelfand B, Yaping F, Kumar D.
    Conference:
    Proceeding of XV Polish Society of Bioinformatics (rok: 2015, ), Wydawca: PT-Bio
    Data:
    konferencja 16-18 April, 2015
    Status:
    Published
    DOI:
    link to the publication
  8. Transcriptome sequencing in Polish cattle breeds.
    Authors:
    Pareek C.S.
    Conference:
    14th annual conference in bioinformatics (rok: 2014, ), Wydawca: Polskie Towarzystwo Bioinformatyczne (PTBI), Warsaw, Poland
    Data:
    konferencja 12-14 June, 2014
    Status:
    Published
  9. Mapping of RNA-seq data generated from Bos Taurus Pituitary gland transcriptome.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Trzaska M, Blaszczyk P, Gelfand B, Yaping F, Kumar D.
    Conference:
    Proceeding of XV Polish Society of Bioinformatics (rok: 2015, ), Wydawca: PT-Bio
    Data:
    konferencja 16-18 April, 2015
    Status:
    Published
    DOI:
    link to the publication
  10. Bos Taurus genome sequencing and transcriptome analysis
    Authors:
    Piotr Dziuba, Marcin Sikora, Chandra Shekhar Pareek
    Conference:
    Proceedings of XXXIX Ogólnopolska Szkoła Chemii (rok: 2013, ), Wydawca: Uniwersytet Mikołaja Kopernika, Toruń.
    Data:
    konferencja 8-12 listopad
    Status:
    Published
    DOI:
    link to the publication
  11. Bovine RNA-seq data analysis of liver and pituitary gland.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Blaszczyk P, Gelfand B, Yaping F, Kumar D.
    Conference:
    Proceedings of international conference on Advances in Next Gegenration Sequencing (rok: 2015, ), Wydawca: https://www.eposters.net/poster/bovine-rna-seq-data-analysis-of-liver-and-pituitary-gland
    Data:
    konferencja 28-29 May 2015
    Status:
    Published
    DOI:
    link to the publication
  12. Identification of Putative SNPs in Bovine Pituitary Gland Transcriptome using RNA-seq
    Authors:
    Pareek CS, Smoczyński R., Dziuba P., Blaszczyk P., Trzaska M., Walendzik P., Kukowska A., Gelfand B., Yaping F., Kumar D.
    Conference:
    Proceedings of PAG XIV, San Diego, CA, USA. (rok: 2016, ), Wydawca: Plant and Animal Genome, San Diego, CA, USA
    Data:
    konferencja Jan. 09-14, 2016
    Status:
    Published
    DOI:
    link to the publication
  13. Bovine RNA-seq data analysis of liver and pituitary gland.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Blaszczyk P, Gelfand B, Yaping F, Kumar D.
    Conference:
    Proceedings of international conference on Advances in Next Gegenration Sequencing (rok: 2015, ), Wydawca: https://www.eposters.net/poster/bovine-rna-seq-data-analysis-of-liver-and-pituitary-gland
    Data:
    konferencja 28-29 May 2015
    Status:
    Published
    DOI:
    link to the publication
  14. Genome sequencing technologies and personalized medicine.
    Authors:
    Chandra Shekhar Pareek
    Conference:
    Proceedings of 2nd World Genetics & Genomics Online Conference (rok: 2013, ), Wydawca: http://targetmeeting.com/Modules/Meetings/MeetingDetails.aspx?Id=50
    Data:
    konferencja 21-23 Maja
    Status:
    Published
    DOI:
    link to the publication
  15. Mapping of RNA-seq data generated from Bos Taurus liver transcriptome.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Trzaska M, Blaszczyk P, Gelfand B, Yaping F, Kumar D
    Conference:
    Proceeding of XV Polish Society of Bioinformatics (rok: 2015, ), Wydawca: PT-bio
    Data:
    konferencja 16-18 April, 2015
    Status:
    Published
    DOI:
    link to the publication
  16. Mapping of RNA-seq data generated from Bos Taurus liver transcriptome.
    Authors:
    Pareek CS, Smoczyński R, Dziuba P, Sikora M, Gołębiewski M, Trzaska M, Blaszczyk P, Gelfand B, Yaping F, Kumar D
    Conference:
    Proceeding of XV Polish Society of Bioinformatics (rok: 2015, ), Wydawca: PT-bio
    Data:
    konferencja 16-18 April, 2015
    Status:
    Published
    DOI:
    link to the publication
  17. Transcriptomic analysis of gene expression data from Bos taurus liver using RNA-Seq
    Authors:
    Pareek CS, Walendzik P, Kadarmideen HN, Kogelman L.
    Conference:
    Proceeding of XVI Polish Society of Bioinformatics (rok: 2016, ), Wydawca: Polish Society of Bioinformatics
    Data:
    konferencja 16-18 June 2016
    Status:
    Published
  18. Identification of Putative SNPs in Bovine Pituitary Gland Transcriptome using RNA-seq
    Authors:
    Pareek CS, Smoczyński R., Dziuba P., Blaszczyk P., Trzaska M., Walendzik P., Kukowska A., Gelfand B., Yaping F., Kumar D.
    Conference:
    Proceedings of PAG XIV, San Diego, CA, USA. (rok: 2016, ), Wydawca: Plant and Animal Genome, San Diego, CA, USA
    Data:
    konferencja Jan. 09-14, 2016
    Status:
    Published
    DOI:
    link to the publication
  1. An overview of next generation genome sequencing platforms.
    Authors:
    Pareek C.S.
    Book:
    Next Generation Sequencing: Current Technologies and Applications (rok: 2014, tom: Chapter 1, strony: 45681), Wydawca: Caister Academic Press
    Status:
    Published
    DOI:
    link to the publication

O Narodowym Centrum Nauki

Finansowanie nauki

Współpraca zagraniczna

Centrum prasowe

Deklaracja dostępności
Przetwarzanie danych osobowych
Polityka cookies

Partnerzy